Expression, purification, crystallization and X-ray crystallographic analysis of the periplasmic binding protein VatD from Vibrio vulnificus M2799

被引:2
|
作者
Miyano, Nao [1 ]
Igarashi, Tomoko [1 ]
Kawano, Hiroaki [1 ]
Miyamoto, Katsushiro [1 ]
Tsuchiya, Takahiro [1 ]
Tomoo, Koji [2 ]
Tsujibo, Hiroshi [1 ]
机构
[1] Osaka Univ Pharmaceut Sci, Dept Microbiol, Takatsuki, Osaka 5691094, Japan
[2] Osaka Univ Pharmaceut Sci, Dept Phys Chem, Takatsuki, Osaka 5691094, Japan
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2015年 / 71卷
关键词
Vibrio vulnificus; periplasmic binding protein; siderophore; iron; desferrioxamine B; VULNIBACTIN; SIDEROPHORE; INFECTIONS; VIRULENCE; FEATURES; SYSTEM;
D O I
10.1107/S2053230X15011759
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Vibrio vulnificus is a halophilic marine microorganism which causes gastroenteritis and primary septicaemia in humans. An important factor that determines the survival of V. vulnificus in the human body is its ability to acquire iron. VatD is a periplasmic siderophore-binding protein from V. vulnificus M2799. The current study reports the expression, purification and crystallization of VatD. Crystals of both apo VatD and a VatD-desferrioxamine B-Fe3+ (VatD-FOB) complex were obtained. The crystal of apo VatD belonged to space group P6(4)22, while the crystal of the VatD-FOB complex belonged to space group P2(1). The difference in the two crystal forms could be caused by the binding of FOB to VatD.
引用
收藏
页码:1078 / 1082
页数:5
相关论文
共 45 条
  • [1] Role of periplasmic binding proteins, FatB and VatD, in the vulnibactin utilization system of Vibrio vulnificus M2799
    Kawano, Hiroaki
    Miyamoto, Katsushiro
    Sakaguchi, Itsumi
    Myojin, Tomoka
    Moriwaki, Masamitsu
    Tsuchiya, Takahiro
    Tanabe, Tomotaka
    Yamamoto, Shigeo
    Tsujibo, Hiroshi
    MICROBIAL PATHOGENESIS, 2013, 65 : 73 - 81
  • [2] Purification, crystallization and preliminary X-ray analysis of the periplasmic haem-binding protein HutB from Vibrio cholerae
    Agarwal, Shubhangi
    Biswas, Maitree
    Dasgupta, Jhimli
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2015, 71 : 401 - 404
  • [3] Crystallization and preliminary X-ray crystallographic analysis of PAS factor from Vibrio vulnificus
    Lee, JH
    Kim, SY
    Rho, SH
    Im, YJ
    Kim, YR
    Kim, MK
    Kang, GB
    Rhee, JH
    Eom, SH
    MOLECULES AND CELLS, 2005, 20 (03) : 361 - 363
  • [4] Crystallization and preliminary X-ray crystallographic analysis of the putative NADP(H)-dependent oxidoreductase YncB from Vibrio vulnificus
    Kim, Min-Kyu
    An, Young Jun
    Jeong, Chang-Sook
    Cha, Sun-Shin
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2012, 68 : 1098 - 1101
  • [5] The putative siderophore-interacting protein from Vibrio anguillarum: protein production, analysis, crystallization and X-ray crystallographic studies
    Han, Yu
    Zang, Kun
    Liu, Changshui
    Li, Yingjie
    Ma, Qingjun
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2018, 74 : 283 - 287
  • [6] Purification, crystallization and preliminary X-ray analysis of an aminoacylhistidine dipeptidase (PepD) from Vibrio alginolyticus
    Chang, Chin-Yuan
    Hsieh, Yin-Cheng
    Wang, Ting-Yi
    Chen, Chun-Jung
    Wu, Tung-Kung
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2009, 65 : 216 - 218
  • [7] Protein expression, crystallization and preliminary X-ray crystallographic studies of LidA from Legionella pneumophila
    Zhu, Wenzhuang
    Meng, Geng
    Liu, Yong
    Zhang, Feiyun
    Zheng, Xiaofeng
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2011, 67 : 637 - 639
  • [8] Expression, purification, crystallization and preliminary crystallographic analysis of laminin-binding protein (Lmb) from Streptococcus agalactiae
    Ragunathan, Preethi
    Spellerberg, Barbara
    Ponnuraj, Karthe
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2009, 65 : 492 - 494
  • [9] Expression, purification, crystallization and preliminary X-ray crystallographic analysis of a novel plant-type ferredoxin/thioredoxin reductase-like protein from Methanosarcina acetivorans
    Kumar, Adepu K.
    Yennawar, Neela H.
    Yennawar, Hemant P.
    Ferry, James G.
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2011, 67 : 775 - 778
  • [10] The Pseudomonas syringae pv. actinidiae chemoreceptor protein F (PscF) periplasmic sensor domain: cloning, purification and X-ray crystallographic analysis
    Oulavallickal, Tifany
    Brewster, Jodi L.
    McKellar, James L. O.
    Fairhurst, Michael J.
    Tenci, Nicholas A.
    Gerth, Monica L.
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2017, 73 : 701 - 705