Roles of Long Noncoding RNAs and Circular RNAs in Translation

被引:30
作者
Chekulaeva, Marina [1 ]
Rajewsky, Nikolaus [1 ]
机构
[1] Max Delbruck Ctr Mol Med, Berlin Inst Med Syst Biol, D-13125 Berlin, Germany
关键词
OPEN READING FRAMES; MESSENGER-RNA; SEQUENCE SPECIFICITY; GENE STRUCTURE; PEPTIDES; REVEALS; IDENTIFICATION; BIOGENESIS; INITIATION; REGIONS;
D O I
10.1101/cshperspect.a032680
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Most of the eukaryotic genome is pervasively transcribed, yielding hundreds to thousands of long noncoding RNAs (lncRNAs) and circular RNAs (circRNAs), some of which are well conserved during evolution. Functions have been described for a few lncRNAs and circRNAs but remain elusive for most. Both classes of RNAs play regulatory roles in translation by interacting with messenger RNAs (mRNAs), microRNAs (miRNAs), or mRNA-binding proteins (RBPs), thereby modulating translation in trans. Moreover, although initially defined as noncoding, a number of lncRNAs and circRNAs have recently been reported to contain functional open reading frames (ORFs). Here, we reviewcurrent understanding of the roles played by lncRNAs and circRNAs in protein synthesis and discuss challenges and open questions in the field.
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页数:15
相关论文
共 102 条
[71]   Observation of dually decoded regions of the human genome using ribosome profiling data [J].
Michel, Audrey M. ;
Choudhury, Kingshuk Roy ;
Firth, Andrew E. ;
Ingolia, Nicholas T. ;
Atkins, John F. ;
Baranov, Pavel V. .
GENOME RESEARCH, 2012, 22 (11) :2219-2229
[72]   Roles of Puf proteins in mRNA degradation and translation [J].
Miller, Melanie A. ;
Olivas, Wendy M. .
WILEY INTERDISCIPLINARY REVIEWS-RNA, 2011, 2 (04) :471-492
[73]   Integrative classification of human coding and noncoding genes through RNA metabolism profiles [J].
Multherjee, Neelanjan ;
Calviello, Lorenzo ;
Hirsekorn, Antje ;
de Pretis, Stefano ;
Pelizzola, Mattia ;
Ohler, Uwe .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2017, 24 (01) :86-96
[74]   A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle [J].
Nelson, Benjamin R. ;
Makarewich, Catherine A. ;
Anderson, Douglas M. ;
Winders, Benjamin R. ;
Troupes, Constantine D. ;
Wu, Fenfen ;
Reese, Austin L. ;
McAnally, John R. ;
Chen, Xiongwen ;
Kavalali, Ege T. ;
Cannon, Stephen C. ;
Houser, Steven R. ;
Bassel-Duby, Rhonda ;
Olson, Eric N. .
SCIENCE, 2016, 351 (6270) :271-275
[75]   Translation of CircRNAs [J].
Pamudurti, Nagarjuna Reddy ;
Bartok, Osnat ;
Jens, Marvin ;
Ashwal-Fluss, Reut ;
Stottmeister, Christin ;
Ruhe, Larissa ;
Hanan, Mor ;
Wyler, Emanuel ;
Perez-Hernandez, Daniel ;
Ramberger, Evelyn ;
Shenzis, Shlomo ;
Samson, Moshe ;
Dittmar, Gunnar ;
Landthaler, Markus ;
Chekulaeva, Marina ;
Rajewsky, Nikolaus ;
Kadener, Sebastian .
MOLECULAR CELL, 2017, 66 (01) :9-+
[76]  
Pasman Z, 1996, RNA, V2, P603
[77]   The Epitranscriptome in Translation Regulation [J].
Peer, Eyal ;
Moshitch-Moshkovitz, Sharon ;
Rechavi, Gideon ;
Dominissini, Dan .
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY, 2019, 11 (08)
[78]   The functions of long noncoding RNAs in development and stem cells [J].
Perry, Rotem Ben-Tov ;
Ulitsky, Igor .
DEVELOPMENT, 2016, 143 (21) :3882-3894
[79]   Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function [J].
Piwecka, Monika ;
Glazar, Petar ;
Hernandez-Miranda, Luis R. ;
Memczak, Sebastian ;
Wolf, Susanne A. ;
Rybak-Wolf, Agnieszka ;
Filipchyk, Andrei ;
Klironomos, Filippos ;
Jara, Cledi Alicia Cerda ;
Fenske, Pascal ;
Trimbuch, Thorsten ;
Zywitza, Vera ;
Plass, Mireya ;
Schreyer, Luisa ;
Ayoub, Salah ;
Kocks, Christine ;
Kuhn, Ralf ;
Rosenmund, Christian ;
Birchmeier, Carmen ;
Rajewsky, Nikolaus .
SCIENCE, 2017, 357 (6357)
[80]   Quantitative profiling of peptides from RNAs classified as noncoding [J].
Prabakaran, Sudhakaran ;
Hemberg, Martin ;
Chauhan, Ruchi ;
Winter, Dominic ;
Tweedie-Cullen, Ry Y. ;
Dittrich, Christian ;
Hong, Elizabeth ;
Gunawardena, Jeremy ;
Steen, Hanno ;
Kreiman, Gabriel ;
Steen, Judith A. .
NATURE COMMUNICATIONS, 2014, 5