Roles of Long Noncoding RNAs and Circular RNAs in Translation

被引:30
作者
Chekulaeva, Marina [1 ]
Rajewsky, Nikolaus [1 ]
机构
[1] Max Delbruck Ctr Mol Med, Berlin Inst Med Syst Biol, D-13125 Berlin, Germany
关键词
OPEN READING FRAMES; MESSENGER-RNA; SEQUENCE SPECIFICITY; GENE STRUCTURE; PEPTIDES; REVEALS; IDENTIFICATION; BIOGENESIS; INITIATION; REGIONS;
D O I
10.1101/cshperspect.a032680
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Most of the eukaryotic genome is pervasively transcribed, yielding hundreds to thousands of long noncoding RNAs (lncRNAs) and circular RNAs (circRNAs), some of which are well conserved during evolution. Functions have been described for a few lncRNAs and circRNAs but remain elusive for most. Both classes of RNAs play regulatory roles in translation by interacting with messenger RNAs (mRNAs), microRNAs (miRNAs), or mRNA-binding proteins (RBPs), thereby modulating translation in trans. Moreover, although initially defined as noncoding, a number of lncRNAs and circRNAs have recently been reported to contain functional open reading frames (ORFs). Here, we reviewcurrent understanding of the roles played by lncRNAs and circRNAs in protein synthesis and discuss challenges and open questions in the field.
引用
收藏
页数:15
相关论文
共 102 条
[21]   Landscape of transcription in human cells [J].
Djebali, Sarah ;
Davis, Carrie A. ;
Merkel, Angelika ;
Dobin, Alex ;
Lassmann, Timo ;
Mortazavi, Ali ;
Tanzer, Andrea ;
Lagarde, Julien ;
Lin, Wei ;
Schlesinger, Felix ;
Xue, Chenghai ;
Marinov, Georgi K. ;
Khatun, Jainab ;
Williams, Brian A. ;
Zaleski, Chris ;
Rozowsky, Joel ;
Roeder, Maik ;
Kokocinski, Felix ;
Abdelhamid, Rehab F. ;
Alioto, Tyler ;
Antoshechkin, Igor ;
Baer, Michael T. ;
Bar, Nadav S. ;
Batut, Philippe ;
Bell, Kimberly ;
Bell, Ian ;
Chakrabortty, Sudipto ;
Chen, Xian ;
Chrast, Jacqueline ;
Curado, Joao ;
Derrien, Thomas ;
Drenkow, Jorg ;
Dumais, Erica ;
Dumais, Jacqueline ;
Duttagupta, Radha ;
Falconnet, Emilie ;
Fastuca, Meagan ;
Fejes-Toth, Kata ;
Ferreira, Pedro ;
Foissac, Sylvain ;
Fullwood, Melissa J. ;
Gao, Hui ;
Gonzalez, David ;
Gordon, Assaf ;
Gunawardena, Harsha ;
Howald, Cedric ;
Jha, Sonali ;
Johnson, Rory ;
Kapranov, Philipp ;
King, Brandon .
NATURE, 2012, 489 (7414) :101-108
[22]   Inverted repeats are necessary for circularization of the mouse testis Sry transcript [J].
Dubin, RA ;
Kazmi, MA ;
Ostrer, H .
GENE, 1995, 167 (1-2) :245-248
[23]   Mechanistic Insights into MicroRNA-Mediated Gene Silencing [J].
Duchaine, Thomas F. ;
Fabian, Marc R. .
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY, 2019, 11 (03)
[24]   The translational landscape of fission-yeast meiosis and sporulation [J].
Duncan, Cala D. S. ;
Mata, Juan .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2014, 21 (07) :641-647
[25]   Circular RNAs: Identification, biogenesis and function [J].
Ebbesen, Karoline K. ;
Kjems, Jorgen ;
Hansen, Thomas B. .
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2016, 1859 (01) :163-168
[26]   The abundance of short proteins in the mammalian proteome [J].
Frith, Martin C. ;
Forrest, Alistair R. ;
Nourbakhsh, Ehsan ;
Pang, Ken C. ;
Kai, Chikatoshi ;
Kawai, Jun ;
Carninci, Piero ;
Hayashizaki, Yoshihide ;
Bailey, Timothy L. ;
Grimmond, Sean M. .
PLOS GENETICS, 2006, 2 (04) :515-528
[27]   Peptides encoded by short ORFs control development and define a new eukaryotic gene family [J].
Galindo, Maximo Ibo ;
Pueyo, Jose Ignacio ;
Fouix, Sylvaine ;
Bishop, Sarah Anne ;
Couso, Juan Pablo .
PLOS BIOLOGY, 2007, 5 (05) :1052-1062
[28]   CIRI: an efficient and unbiased algorithm for de novo circular RNA identification [J].
Gao, Yuan ;
Wang, Jinfeng ;
Zhao, Fangqing .
GENOME BIOLOGY, 2015, 16
[29]   Pumilio1 Haploinsufficiency Leads to SCA1-like Neurodegeneration by Increasing Wild-Type Ataxin1 Levels [J].
Gennarino, Vincenzo A. ;
Singh, Ravi K. ;
White, Joshua J. ;
De Maio, Antonia ;
Han, Kihoon ;
Kim, Ji-Yoen ;
Jafar-Nejad, Paymaan ;
di Ronza, Alberto ;
Kang, Hyojin ;
Sayegh, Layal S. ;
Cooper, Thomas A. ;
Orr, Harry T. ;
Sillitoe, Roy V. ;
Zoghbi, Huda Y. .
CELL, 2015, 160 (06) :1087-1098
[30]   circBase: a database for circular RNAs [J].
Glazar, Petar ;
Papavasileiou, Panagiotis ;
Rajewsky, Nikolaus .
RNA, 2014, 20 (11) :1666-1670