Roles of Long Noncoding RNAs and Circular RNAs in Translation

被引:30
作者
Chekulaeva, Marina [1 ]
Rajewsky, Nikolaus [1 ]
机构
[1] Max Delbruck Ctr Mol Med, Berlin Inst Med Syst Biol, D-13125 Berlin, Germany
关键词
OPEN READING FRAMES; MESSENGER-RNA; SEQUENCE SPECIFICITY; GENE STRUCTURE; PEPTIDES; REVEALS; IDENTIFICATION; BIOGENESIS; INITIATION; REGIONS;
D O I
10.1101/cshperspect.a032680
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Most of the eukaryotic genome is pervasively transcribed, yielding hundreds to thousands of long noncoding RNAs (lncRNAs) and circular RNAs (circRNAs), some of which are well conserved during evolution. Functions have been described for a few lncRNAs and circRNAs but remain elusive for most. Both classes of RNAs play regulatory roles in translation by interacting with messenger RNAs (mRNAs), microRNAs (miRNAs), or mRNA-binding proteins (RBPs), thereby modulating translation in trans. Moreover, although initially defined as noncoding, a number of lncRNAs and circRNAs have recently been reported to contain functional open reading frames (ORFs). Here, we reviewcurrent understanding of the roles played by lncRNAs and circRNAs in protein synthesis and discuss challenges and open questions in the field.
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页数:15
相关论文
共 102 条
[1]   Rolling Circle Translation of Circular RNA in Living Human Cells [J].
Abe, Naoko ;
Matsumoto, Ken ;
Nishihara, Mizuki ;
Nakano, Yukiko ;
Shibata, Aya ;
Maruyama, Hideto ;
Shuto, Satoshi ;
Matsuda, Akira ;
Yoshida, Minoru ;
Ito, Yoshihiro ;
Abe, Hiroshi .
SCIENTIFIC REPORTS, 2015, 5
[2]   Novel coding, translation, and gene expression of a replicating covalently closed circular RNA of 220 nt [J].
AbouHaidar, Mounir Georges ;
Venkataraman, Srividhya ;
Golshani, Ashkan ;
Liu, Bolin ;
Ahmad, Tauqeer .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (40) :14542-14547
[3]   A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance [J].
Anderson, Douglas M. ;
Anderson, Kelly M. ;
Chang, Chi-Lun ;
Makarewich, Catherine A. ;
Nelson, Benjamin R. ;
McAnally, John R. ;
Kasaragod, Prasad ;
Shelton, John M. ;
Liou, Jen ;
Bassel-Duby, Rhonda ;
Olson, Eric N. .
CELL, 2015, 160 (04) :595-606
[4]   Emerging evidence for functional peptides encoded by short open reading frames [J].
Andrews, Shea J. ;
Rothnagel, Joseph A. .
NATURE REVIEWS GENETICS, 2014, 15 (03) :193-204
[5]   circRNA Biogenesis Competes with Pre-mRNA Splicing [J].
Ashwal-Fluss, Reut ;
Meyer, Markus ;
Pamudurti, Nagarjuna Reddy ;
Ivanov, Andranik ;
Bartok, Osnat ;
Hanan, Mor ;
Evantal, Naveh ;
Memczak, Sebastian ;
Rajewsky, Nikolaus ;
Kadener, Sebastian .
MOLECULAR CELL, 2014, 56 (01) :55-66
[6]   Long noncoding RNAs are rarely translated in two human cell lines [J].
Banfai, Balazs ;
Jia, Hui ;
Khatun, Jainab ;
Wood, Emily ;
Risk, Brian ;
Gundling, William E., Jr. ;
Kundaje, Anshul ;
Gunawardena, Harsha P. ;
Yu, Yanbao ;
Xie, Ling ;
Krajewski, Krzysztof ;
Strahl, Brian D. ;
Chen, Xian ;
Bickel, Peter ;
Giddings, Morgan C. ;
Brown, James B. ;
Lipovich, Leonard .
GENOME RESEARCH, 2012, 22 (09) :1646-1657
[7]   Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation [J].
Bazzini, Ariel A. ;
Johnstone, Timothy G. ;
Christiano, Romain ;
Mackowiak, Sebastian D. ;
Obermayer, Benedikt ;
Fleming, Elizabeth S. ;
Vejnar, Charles E. ;
Lee, Miler T. ;
Rajewsky, Nikolaus ;
Walther, Tobias C. ;
Giraldez, Antonio J. .
EMBO JOURNAL, 2014, 33 (09) :981-993
[8]   Localization and abundance analysis of human IncRNAs at single-cell and single-molecule resolution [J].
Cabili, Moran N. ;
Dunagin, Margaret C. ;
McClanahan, Patrick D. ;
Biaesch, Andrew ;
Padovan-Merhar, Olivia ;
Regev, Aviv ;
Rinn, John L. ;
Raj, Arjun .
GENOME BIOLOGY, 2015, 16
[9]  
Calviello L, 2016, NAT METHODS, V13, P165, DOI [10.1038/NMETH.3688, 10.1038/nmeth.3688]
[10]   Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat [J].
Carrieri, Claudia ;
Cimatti, Laura ;
Biagioli, Marta ;
Beugnet, Anne ;
Zucchelli, Silvia ;
Fedele, Stefania ;
Pesce, Elisa ;
Ferrer, Isidre ;
Collavin, Licio ;
Santoro, Claudio ;
Forrest, Alistair R. R. ;
Carninci, Piero ;
Biffo, Stefano ;
Stupka, Elia ;
Gustincich, Stefano .
NATURE, 2012, 491 (7424) :454-+