The raspberry model for hydrodynamic interactions revisited. I. Periodic arrays of spheres and dumbbells

被引:38
作者
Fischer, Lukas P. [1 ]
Peter, Toni [1 ]
Holm, Christian [1 ]
de Graaf, Joost [1 ]
机构
[1] Univ Stuttgart, Inst Computat Phys, D-70569 Stuttgart, Germany
关键词
DILUTE POLYMER-SOLUTIONS; ROTATIONAL BROWNIAN MOTIONS; LATTICE-BOLTZMANN; FRICTIONAL-PROPERTIES; INTRINSIC-VISCOSITY; MOLECULAR-DYNAMICS; ARBITRARY SHAPE; RIGID PARTICLES; SIMULATION; SUSPENSIONS;
D O I
10.1063/1.4928502
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The so-called "raspberry" model refers to the hybrid lattice-Boltzmann and Langevin molecular dynamics scheme for simulating the dynamics of suspensions of colloidal particles, originally developed by Lobaskin and Dunweg [New J. Phys. 6, 54 (2004)], wherein discrete surface points are used to achieve fluid-particle coupling. This technique has been used in many simulation studies on the behavior of colloids. However, there are fundamental questions with regards to the use of this model. In this paper, we examine the accuracy with which the raspberry method is able to reproduce Stokes-level hydrodynamic interactions when compared to analytic expressions for solid spheres in simple-cubic crystals. To this end, we consider the quality of numerical experiments that are traditionally used to establish these properties and we discuss their shortcomings. We show that there is a discrepancy between the translational and rotational mobility reproduced by the simple raspberry model and present a way to numerically remedy this problem by adding internal coupling points. Finally, we examine a non-convex shape, namely, a colloidal dumbbell, and show that the filled raspberry model replicates the desired hydrodynamic behavior in bulk for this more complicated shape. Our investigation is continued in de Graaf et al. [J. Chem. Phys. 143, 084108 (2015)], wherein we consider the raspberry model in the confining geometry of two parallel plates. (C) 2015 AIP Publishing LLC.
引用
收藏
页数:21
相关论文
共 74 条
[21]   HYDRODYNAMIC PROPERTIES OF COMPLEX, RIGID, BIOLOGICAL MACROMOLECULES - THEORY AND APPLICATIONS [J].
DELATORRE, JG ;
BLOOMFIELD, VA .
QUARTERLY REVIEWS OF BIOPHYSICS, 1981, 14 (01) :81-139
[22]   FRICTIONAL PROPERTIES OF DILUTE POLYMER-SOLUTIONS .2. EFFECT OF PREAVERAGING [J].
DEUTCH, JM ;
FELDERHOF, BU .
JOURNAL OF CHEMICAL PHYSICS, 1975, 62 (06) :2398-2405
[23]  
Padding, 2010, FARADAY DISCUSS, V144, P323
[24]   Progress in the understanding of the fluctuating lattice Boltzmann equation [J].
Duenweg, Burkhard ;
Schiller, Ulf D. ;
Ladd, Anthony J. C. .
COMPUTER PHYSICS COMMUNICATIONS, 2009, 180 (04) :605-608
[25]   Lattice Boltzmann Simulations of Soft Matter Systems [J].
Duenweg, Burkhard ;
Ladd, Anthony J. C. .
ADVANCED COMPUTER SIMULATION APPROACHES FOR SOFT MATTER SCIENCES III, 2009, 221 :89-166
[26]   Statistical mechanics of the fluctuating lattice Boltzmann equation [J].
Duenweg, Burkhard ;
Schiller, Ulf D. ;
Ladd, Anthony J. C. .
PHYSICAL REVIEW E, 2007, 76 (03)
[27]   STATISTICAL-MECHANICS OF DISSIPATIVE PARTICLE DYNAMICS [J].
ESPANOL, P ;
WARREN, P .
EUROPHYSICS LETTERS, 1995, 30 (04) :191-196
[28]  
Euler L., 1757, Mem. Acad. Sci. Berl., V11, P274, DOI DOI 10.48550/ARXIV.0802.2383
[29]   Velocity relaxation of a porous sphere immersed in a viscous incompressible fluid [J].
Felderhof, B. U. .
JOURNAL OF CHEMICAL PHYSICS, 2014, 140 (13)
[30]   FRICTIONAL PROPERTIES OF DILUTE POLYMER-SOLUTIONS .1. ROTATIONAL FRICTION COEFFICIENT [J].
FELDERHOF, BU ;
DEUTCH, JM .
JOURNAL OF CHEMICAL PHYSICS, 1975, 62 (06) :2391-2397