Epitranscriptomic RNA Methylation in Plant Development and Abiotic Stress Responses

被引:111
作者
Hu, Jianzhong [1 ]
Manduzio, Stefano [1 ]
Kang, Hunseung [1 ]
机构
[1] Chonnam Natl Univ, Coll Agr & Life Sci, Dept Appl Biol, Gwangju, South Korea
关键词
abiotic stress; epitranscriptome; RNA metabolism; RNA methylation; RNA modification; MESSENGER-RNA; M(6)A RNA; BINDING-PROTEIN; NUCLEAR-RNA; N-6-METHYLADENOSINE; ARABIDOPSIS; EXPRESSION; DEMETHYLASE; TRANSLATION; HOMOLOG;
D O I
10.3389/fpls.2019.00500
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Recent advances in methylated RNA immunoprecipitation followed by sequencing and mass spectrometry have revealed widespread chemical modifications on mRNAs. Methylation of RNA bases such as N-6-methyladenosine (m(6)A) and 5-methylcytidine (m(5)C) is the most prevalent mRNA modifications found in eukaryotes. In recent years, cellular factors introducing, interpreting, and deleting specific methylation marks on mRNAs, designated as "writers (methyltransferase)," "readers (RNA-binding protein)," and "erasers (demethylase)," respectively, have been identified in plants and animals. An emerging body of evidence shows that methylation on mRNAs affects diverse aspects of RNA metabolism, including stability, splicing, nucleus-to-cytoplasm export, alternative polyadenylation, and translation. Although our understanding for roles of writers, readers, and erasers in plants is far behind that for their animal counterparts, accumulating reports clearly demonstrate that these factors are essential for plant growth and abiotic stress responses. This review emphasizes the crucial roles of epitranscriptomic modifications of RNAs in new layer of gene expression regulation during the growth and response of plants to abiotic stresses.
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页数:11
相关论文
共 106 条
[1]   HNRNPA2B1 Is a Mediator of m6A-Dependent Nuclear RNA Processing Events [J].
Alarcon, Claudio R. ;
Goodarzi, Hani ;
Lee, Hyeseung ;
Liu, Xuhang ;
Tavazoie, Saeed ;
Tavazoie, Sohail F. .
CELL, 2015, 162 (06) :1299-1308
[2]   ALKBHs-facilitated RNA modifications and de-modifications [J].
Alemu, Endalkachew A. ;
He, Chuan ;
Klungland, Arne .
DNA REPAIR, 2016, 44 :87-91
[3]   RNA Chemical Proteomics Reveals the N6-Methyladenosine (m6A)-Regulated Protein-RNA Interactome [J].
Arguello, A. Emilia ;
DeLiberto, Amanda N. ;
Kleiner, Ralph E. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2017, 139 (48) :17249-17252
[4]   An m6A-YTH Module Controls Developmental Timing and Morphogenesis in Arabidopsis[OPEN] [J].
Arribas-Hernandez, Laura ;
Bressendorff, Simon ;
Hansen, Mathias Henning ;
Poulsen, Christian ;
Erdmann, Susanne ;
Brodersen, Peter .
PLANT CELL, 2018, 30 (05) :952-967
[5]   N6-methyladenosine demethylase FTO targets pre-mRNAs and regulates alternative splicing and 3'-end processing [J].
Bartosovic, Marek ;
Molares, Helena Covelo ;
Gregorova, Pavlina ;
Hrossova, Dominika ;
Kudla, Grzegorz ;
Vanacova, Stepanka .
NUCLEIC ACIDS RESEARCH, 2017, 45 (19) :11356-11370
[6]   MODOMICS: a database of RNA modification pathways. 2017 update [J].
Boccaletto, Pietro ;
Machnicka, Magdalena A. ;
Purta, Elzbieta ;
Piatkowski, Pawe ;
Baginski, Blazej ;
Wirecki, Tomasz K. ;
de Crecy-Lagard, Valerie ;
Ross, Robert ;
Limbach, Patrick A. ;
Kotter, Annika ;
Helm, Mark ;
Bujnicki, Janusz M. .
NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) :D303-D307
[7]   Adenosine methylation in Arabidopsis mRNA is associated with the 3′ end and reduced levels cause developmental defects [J].
Bodi, Zsuzsanna ;
Zhong, Silin ;
Mehra, Surbhi ;
Song, Jie ;
Graham, Neil ;
Li, Hongying ;
May, Sean ;
Fray, Rupert George .
FRONTIERS IN PLANT SCIENCE, 2012, 3
[8]   The RNA modification database, RNAMDB: 2011 update [J].
Cantara, William A. ;
Crain, Pamela F. ;
Rozenski, Jef ;
McCloskey, James A. ;
Harris, Kimberly A. ;
Zhang, Xiaonong ;
Vendeix, Franck A. P. ;
Fabris, Daniele ;
Agris, Paul F. .
NUCLEIC ACIDS RESEARCH, 2011, 39 :D195-D201
[9]   m6A RNA Methylation Is Regulated by MicroRNAs and Promotes Reprogramming to Pluripotency [J].
Chen, Tong ;
Hao, Ya-Juan ;
Zhang, Ying ;
Li, Miao-Miao ;
Wang, Meng ;
Han, Weifang ;
Wu, Yongsheng ;
Lv, Ying ;
Hao, Jie ;
Wang, Libin ;
Li, Ang ;
Yang, Ying ;
Jin, Kang-Xuan ;
Zhao, Xu ;
Li, Yuhuan ;
Ping, Xiao-Li ;
Lai, Wei-Yi ;
Wu, Li-Gang ;
Jiang, Guibin ;
Wang, Hai-Lin ;
Sang, Lisi ;
Wang, Xiu-Jie ;
Yang, Yun-Gui ;
Zhou, Qi .
CELL STEM CELL, 2015, 16 (03) :289-301
[10]   N6-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics [J].
Choi, Junhong ;
Ieong, Ka-Weng ;
Demirci, Hasan ;
Chen, Jin ;
Petrov, Alexey ;
Prabhakar, Arjun ;
O'Leary, Sean E. ;
Dominissini, Dan ;
Rechavi, Gideon ;
Soltis, S. Michael ;
Ehrenberg, Mans ;
Puglisi, Joseph D. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2016, 23 (02) :110-+