机构:
Helmholtz Zentrum Berlin Mat & Energie, Macromol Crystallog HZB MX, Albert Einstein Str 15, D-12489 Berlin, GermanyBose Inst, Dept Biochem, P-1-12 CIT Scheme VIIM, Kolkata 700054, India
[2] Bose Inst, Div Bioinformat, P-1-12 CIT Scheme VIIM, Kolkata 700054, India
[3] Helmholtz Zentrum Berlin Mat & Energie, Macromol Crystallog HZB MX, Albert Einstein Str 15, D-12489 Berlin, Germany
[4] Postgrad Inst Med Educ & Res, Expt Med & Biotechnol Dept, Chandigarh 160012, India
来源:
IUCRJ
|
2020年
/
7卷
关键词:
radiation damage;
disulfide bonds;
S center dot center dot center dot O interactions;
quantum-chemical calculations;
NBO;
electron transfer;
PROTEIN CRYSTALS;
X-RAYS;
MACROMOLECULAR CRYSTALLOGRAPHY;
INSULIN;
SULFUR;
D O I:
10.1107/S2052252520008520
中图分类号:
O6 [化学];
学科分类号:
0703 ;
摘要:
Radiation-induced damage to protein crystals during X-ray diffraction data collection is a major impediment to obtaining accurate structural information on macromolecules. Some of the specific impairments that are inflicted upon highly brilliant X-ray irradiation are metal-ion reduction, disulfide-bond cleavage and a loss of the integrity of the carboxyl groups of acidic residues. With respect to disulfide-bond reduction, previous results have indicated that not all disulfide bridges are equally susceptible to damage. A careful analysis of the chemical environment of disulfide bonds in the structures of elastase, lysozyme, acetylcholinesterase and other proteins suggests that S-S bonds which engage in a close contact with a carbonyl O atom along the extension of the S -S bond vector are more susceptible to reduction than the others. Such an arrangement predisposes electron transfer to occur from the O atom to the disulfide bond, leading to its reduction. The interaction between a nucleophile and an electrophile, akin to hydrogen bonding, stabilizes protein structures, but it also provides a pathway of electron transfer to the S-S bond, leading to its reduction during exposure of the protein crystal to an intense X-ray beam. An otherwise stabilizing interaction can thus be the cause of destabilization under the condition of radiation exposure.
机构:
CEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, FranceCEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, France
Carpentier, Philippe
Royant, Antoine
论文数: 0引用数: 0
h-index: 0
机构:
CEA, Inst Biol Struct Jean Pierre Ebel, Lab Biophys Mol, F-38027 Grenoble, France
European Synchrotron Radiat Facil, F-38043 Grenoble, FranceCEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, France
Royant, Antoine
Weik, Martin
论文数: 0引用数: 0
h-index: 0
机构:
CEA, Inst Biol Struct Jean Pierre Ebel, Lab Biophys Mol, F-38027 Grenoble, FranceCEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, France
Weik, Martin
Bourgeois, Dominique
论文数: 0引用数: 0
h-index: 0
机构:
CEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, FranceCEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, France
机构:
East Tennessee State Univ, Dept Phys, Box 70652, Johnson City, TN 37614 USAEast Tennessee State Univ, Dept Phys, Box 70652, Johnson City, TN 37614 USA
Close, David M.
Bernhard, William A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Rochester, Dept Biochem & Biophys, 601 Elmwood Ave, Rochester, NY 14642 USAEast Tennessee State Univ, Dept Phys, Box 70652, Johnson City, TN 37614 USA
机构:
CEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, FranceCEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, France
Carpentier, Philippe
Royant, Antoine
论文数: 0引用数: 0
h-index: 0
机构:
CEA, Inst Biol Struct Jean Pierre Ebel, Lab Biophys Mol, F-38027 Grenoble, France
European Synchrotron Radiat Facil, F-38043 Grenoble, FranceCEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, France
Royant, Antoine
Weik, Martin
论文数: 0引用数: 0
h-index: 0
机构:
CEA, Inst Biol Struct Jean Pierre Ebel, Lab Biophys Mol, F-38027 Grenoble, FranceCEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, France
Weik, Martin
Bourgeois, Dominique
论文数: 0引用数: 0
h-index: 0
机构:
CEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, FranceCEA, Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble, France
机构:
East Tennessee State Univ, Dept Phys, Box 70652, Johnson City, TN 37614 USAEast Tennessee State Univ, Dept Phys, Box 70652, Johnson City, TN 37614 USA
Close, David M.
Bernhard, William A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Rochester, Dept Biochem & Biophys, 601 Elmwood Ave, Rochester, NY 14642 USAEast Tennessee State Univ, Dept Phys, Box 70652, Johnson City, TN 37614 USA