The susceptibility of disulfide bonds towards radiation damage may be explained by S•••O interactions

被引:12
作者
Bhattacharyya, Rajasri [1 ,4 ]
Dhar, Jesmita [1 ]
Dastidar, Shubhra Ghosh [2 ]
Chakrabarti, Pinak [1 ]
Weiss, Manfred S. [3 ]
机构
[1] Bose Inst, Dept Biochem, P-1-12 CIT Scheme VIIM, Kolkata 700054, India
[2] Bose Inst, Div Bioinformat, P-1-12 CIT Scheme VIIM, Kolkata 700054, India
[3] Helmholtz Zentrum Berlin Mat & Energie, Macromol Crystallog HZB MX, Albert Einstein Str 15, D-12489 Berlin, Germany
[4] Postgrad Inst Med Educ & Res, Expt Med & Biotechnol Dept, Chandigarh 160012, India
来源
IUCRJ | 2020年 / 7卷
关键词
radiation damage; disulfide bonds; S center dot center dot center dot O interactions; quantum-chemical calculations; NBO; electron transfer; PROTEIN CRYSTALS; X-RAYS; MACROMOLECULAR CRYSTALLOGRAPHY; INSULIN; SULFUR;
D O I
10.1107/S2052252520008520
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Radiation-induced damage to protein crystals during X-ray diffraction data collection is a major impediment to obtaining accurate structural information on macromolecules. Some of the specific impairments that are inflicted upon highly brilliant X-ray irradiation are metal-ion reduction, disulfide-bond cleavage and a loss of the integrity of the carboxyl groups of acidic residues. With respect to disulfide-bond reduction, previous results have indicated that not all disulfide bridges are equally susceptible to damage. A careful analysis of the chemical environment of disulfide bonds in the structures of elastase, lysozyme, acetylcholinesterase and other proteins suggests that S-S bonds which engage in a close contact with a carbonyl O atom along the extension of the S -S bond vector are more susceptible to reduction than the others. Such an arrangement predisposes electron transfer to occur from the O atom to the disulfide bond, leading to its reduction. The interaction between a nucleophile and an electrophile, akin to hydrogen bonding, stabilizes protein structures, but it also provides a pathway of electron transfer to the S-S bond, leading to its reduction during exposure of the protein crystal to an intense X-ray beam. An otherwise stabilizing interaction can thus be the cause of destabilization under the condition of radiation exposure.
引用
收藏
页码:825 / 834
页数:10
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