Nakamurella panacisegetis sp nov and proposal for reclassification of Humicoccus flavidus Yoon et al., 2007 and Saxeibacter lacteus Lee et al., 2008 as Nakamurella flavida comb. nov and Nakamurella lactea comb. nov.

被引:15
作者
Kim, Kwang Kyu [1 ]
Lee, Keun Chul [1 ]
Lee, Jung-Sook [1 ]
机构
[1] Korea Res Inst Biosci & Biotechnol, Korean Collect Type Cultures, Biol Resource Ctr, Taejon 305806, South Korea
基金
新加坡国家研究基金会;
关键词
Nakamurella panacisegetis sp nov; Reclassification; rpoB gene; EMENDED DESCRIPTIONS; GEN; NOV; ACTINOBACTERIUM; MODESTOBACTER; SEQUENCE; SOIL;
D O I
10.1016/j.syapm.2012.05.002
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
A novel actinobacterial strain, designated P4-7(T), was isolated from soil of a ginseng field located in Geumsan County, Korea. Cells of the strain were aerobic, Gram-stain-positive, non-motile, short rods. The isolate contained MK-8(H-4) as the predominant menaquinone, iso-C-16:0, anteiso-C-15:0 and anteiso-C-17:0 as the major fatty acids, diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol as the major polar lipids, glucose, mannose, xylose, ribose and rhamnose as whole-cell sugars, and meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain P4-7(T) belongs to the family Nakamurellaceae and is most closely related to Nakamurella multipartita, Humicoccus flavidus and Saxeibacter lacteus (96.3, 97.0 and 96.4% similarity to the respective type strains). Based on comparative analyses of the 16S rRNA and rpoB gene sequences and chemotaxonomic data, it is proposed that H. flavidus and S. lacteus be transferred to the genus Nakamurella. Combined genotypic and phenotypic data also suggested that strain P4-7(T) be placed in a novel species of the genus Nakamurella, for which the name Nakamurella panacisegetis sp. nov. is proposed; the type strain is P4-7(T) (=KC 19426(T) = CECT = 7604(T)). (c) 2012 Elsevier GmbH. All rights reserved.
引用
收藏
页码:291 / 296
页数:6
相关论文
共 21 条
  • [11] Modestobacter versicolor sp nov., an actinobacterium from biological soil crusts that produces melanins under oligotrophy, with emended descriptions of the genus Modestobacter and Modestobacter multiseptatus Mevs et al. 2000
    Reddy, Gundlapally S. N.
    Potrafka, Ruth M.
    Garcia-Pichel, Ferran
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 : 2014 - 2020
  • [12] Proposal for a new hierarchic classification system, Actinobacteria classis nov
    Stackebrandt, E
    Rainey, FA
    WardRainey, NL
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (02): : 479 - 491
  • [13] Stackebrandt E., 1993, Handbook of new bacterial systematics, P151
  • [14] Sporichthya brevicatena sp nov.
    Tamura, T
    Hayakawa, M
    Hatano, K
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1999, 49 : 1779 - 1784
  • [15] Proposal of Nakamurella gen. nov as a substitute for the bacterial genus Microsphaera Yoshimi et al. 1996 and Nakamurellaceae fam. nov as a substitute for the illegitimate bacterial family Microsphaeraceae Rainey et al. 1997
    Tao, TS
    Yue, YY
    Chen, WX
    Chen, WF
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2004, 54 : 999 - 1000
  • [16] Complete genome sequence of Nakamurella multipartita type strain (Y-104T)
    Tice, Hope
    Mayilraj, Shanmugam
    Sims, David
    Lapidus, Alla
    Nolan, Matt
    Lucas, Susan
    Del Rio, Tijana Glavina
    Copeland, Alex
    Cheng, Jan-Fang
    Meincke, Linda
    Bruce, David
    Goodwin, Lynne
    Pitluck, Sam
    Ivanova, Natalia
    Mavromatis, Konstantinos
    Ovchinnikova, Galina
    Pati, Amrita
    Chen, Amy
    Palaniappan, Krishna
    Land, Miriam
    Hauser, Loren
    Chang, Yun-Juan
    Jeffries, Cynthia D.
    Detter, John C.
    Brettin, Thomas
    Rohde, Manfred
    Goeker, Markus
    Bristow, Jim
    Eisen, Jonathan A.
    Markowitz, Victor
    Hugenholtz, Philip
    Kyrpides, Nikos C.
    Klenk, Hans-Peter
    Chen, Feng
    [J]. STANDARDS IN GENOMIC SCIENCES, 2010, 2 (02): : 168 - 175
  • [17] Blastococcus saxobsidens sp nov., and emended descriptions of the genus Blastococcus Ahrens and Moll 1970 and Blastococcus aggregatus Ahrens and Moll 1970
    Urzì, C
    Salamone, P
    Schumann, P
    Rohde, M
    Stackebrandt, E
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2004, 54 : 253 - 259
  • [18] Modestobacter marinus sp nov., a psychrotolerant actinobacterium from deep-sea sediment, and emended description of the genus Modestobacter
    Xiao, Jing
    Luo, Yingxue
    Xu, Jing
    Xie, Shujie
    Xu, Jun
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2011, 61 : 1710 - 1714
  • [19] Humicoccus flavidus gen. nov., sp nov., isolated from soil
    Yoon, Jung-Hoon
    Kang, So-Jung
    Jung, Seo-Youn
    Oh, Tae-Kwang
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 : 56 - 59
  • [20] Isolation and characterization of Microsphaera multipartita gen nov, sp nov, a polysaccharide-accumulating gram-positive bacterium from activated sludge
    Yoshimi, Y
    Hiraishi, A
    Nakamura, K
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1996, 46 (02): : 519 - 525