Nakamurella panacisegetis sp nov and proposal for reclassification of Humicoccus flavidus Yoon et al., 2007 and Saxeibacter lacteus Lee et al., 2008 as Nakamurella flavida comb. nov and Nakamurella lactea comb. nov.

被引:15
作者
Kim, Kwang Kyu [1 ]
Lee, Keun Chul [1 ]
Lee, Jung-Sook [1 ]
机构
[1] Korea Res Inst Biosci & Biotechnol, Korean Collect Type Cultures, Biol Resource Ctr, Taejon 305806, South Korea
基金
新加坡国家研究基金会;
关键词
Nakamurella panacisegetis sp nov; Reclassification; rpoB gene; EMENDED DESCRIPTIONS; GEN; NOV; ACTINOBACTERIUM; MODESTOBACTER; SEQUENCE; SOIL;
D O I
10.1016/j.syapm.2012.05.002
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
A novel actinobacterial strain, designated P4-7(T), was isolated from soil of a ginseng field located in Geumsan County, Korea. Cells of the strain were aerobic, Gram-stain-positive, non-motile, short rods. The isolate contained MK-8(H-4) as the predominant menaquinone, iso-C-16:0, anteiso-C-15:0 and anteiso-C-17:0 as the major fatty acids, diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol as the major polar lipids, glucose, mannose, xylose, ribose and rhamnose as whole-cell sugars, and meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain P4-7(T) belongs to the family Nakamurellaceae and is most closely related to Nakamurella multipartita, Humicoccus flavidus and Saxeibacter lacteus (96.3, 97.0 and 96.4% similarity to the respective type strains). Based on comparative analyses of the 16S rRNA and rpoB gene sequences and chemotaxonomic data, it is proposed that H. flavidus and S. lacteus be transferred to the genus Nakamurella. Combined genotypic and phenotypic data also suggested that strain P4-7(T) be placed in a novel species of the genus Nakamurella, for which the name Nakamurella panacisegetis sp. nov. is proposed; the type strain is P4-7(T) (=KC 19426(T) = CECT = 7604(T)). (c) 2012 Elsevier GmbH. All rights reserved.
引用
收藏
页码:291 / 296
页数:6
相关论文
共 21 条
  • [1] Complete rpoB gene sequencing as a suitable supplement to DNA-DNA hybridization for bacterial species and genus delineation
    Adekambi, Toiedi
    Shinnick, Thomas M.
    Raoult, Dier
    Drancourt, Michel
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 : 1807 - 1814
  • [2] Ribosomal DNA sequencing for identification of aerobic gram-positive rods in the clinical laboratory (an 18-month evaluation)
    Bosshard, PP
    Abels, S
    Zbinden, R
    Böttger, EC
    Altwegg, M
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2003, 41 (09) : 4134 - 4140
  • [3] Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies
    Case, Rebecca J.
    Boucher, Yan
    Dahllof, Ingela
    Holmstrom, Carola
    Doolittle, W. Ford
    Kjelleberg, Staffan
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73 (01) : 278 - 288
  • [4] Cowan ST, 1965, MANUAL IDENTIFICATIO
  • [5] THE TAXONOMIC SIGNIFICANCE OF FERMENTATIVE VERSUS OXIDATIVE METABOLISM OF CARBOHYDRATES BY VARIOUS GRAM NEGATIVE BACTERIA
    HUGH, R
    LEIFSON, E
    [J]. JOURNAL OF BACTERIOLOGY, 1953, 66 (01) : 24 - 26
  • [6] Patulibacter ginsengiterrae sp nov., isolated from soil of a ginseng field, and an emended description of the genus Patulibacter
    Kim, Kwang Kyu
    Lee, Keun Chul
    Lee, Jung-Sook
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 : 563 - 568
  • [7] Paenibacillus sputi sp. nov., isolated from the sputum of a patient with pulmonary disease
    Kim, Kwang Kyu
    Lee, Keun Chul
    Yu, Heekyung
    Ryoo, Sungweon
    Park, Youngkil
    Lee, Jung-Sook
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2010, 60 : 2371 - 2376
  • [8] LAPAGE S.P., 1992, Bacteriological Code
  • [9] Saxeibacter lacteus gen. nov., sp nov., an actinobacterium isolated from rock
    Lee, Soon Dong
    Park, Sang Kyu
    Yun, Yoe-Won
    Lee, Dong Wan
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 : 906 - 909
  • [10] Bacterial phylogeny based on comparative sequence analysis
    Ludwig, W
    Strunk, O
    Klugbauer, S
    Klugbauer, N
    Weizenegger, M
    Neumaier, J
    Bachleitner, M
    Schleifer, KH
    [J]. ELECTROPHORESIS, 1998, 19 (04) : 554 - 568