CcpNmr AnalysisAssign: a flexible platform for integrated NMR analysis

被引:277
作者
Skinner, Simon P. [1 ]
Fogh, Rasmus H. [1 ]
Boucher, Wayne [2 ]
Ragan, Timothy J. [1 ]
Mureddu, Luca G. [1 ]
Vuister, Geerten W. [1 ]
机构
[1] Univ Leicester, Leicester Inst Struct & Chem Biol, Dept Mol & Cell Biol, Leicester, Leics, England
[2] Univ Cambridge, Dept Biochem, Cambridge, England
基金
英国生物技术与生命科学研究理事会;
关键词
NMR; Data analysis; Software; CCPN; !text type='Python']Python[!/text; Assignment; PROTEIN-STRUCTURE DETERMINATION; ASSIGNMENT; SPECTROSCOPY; PROGRAM; SYSTEM; STATES;
D O I
10.1007/s10858-016-0060-y
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
NMR spectroscopy is an indispensably powerful technique for the analysis of biomolecules under ambient conditions, both for structural- and functional studies. However, in practice the complexity of the technique has often frustrated its application by non-specialists. In this paper, we present CcpNmr version-3, the latest software release from the Collaborative Computational Project for NMR, for all aspects of NMR data analysis, including liquid- and solid-state NMR data. This software has been designed to be simple, functional and flexible, and aims to ensure that routine tasks can be performed in a straightforward manner. We have designed the software according to modern software engineering principles and leveraged the capabilities of modern graphics libraries to simplify a variety of data analysis tasks. We describe the process of backbone assignment as an example of the flexibility and simplicity of implementing workflows, as well as the toolkit used to create the necessary graphics for this workflow. The package can be downloaded from www.ccpn.ac.uk/v3-software/downloads and is freely available to all non-profit organisations.
引用
收藏
页码:111 / 124
页数:14
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