Conformational analysis of cellobiose by electronic structure theories

被引:48
作者
French, Alfred D. [1 ]
Johnson, Glenn P. [1 ]
Cramer, Christopher J. [2 ,3 ]
Csonka, Gabor I. [4 ]
机构
[1] USDA, So Reg Res Ctr, New Orleans, LA 70124 USA
[2] Univ Minnesota, Dept Chem, Minneapolis, MN 55455 USA
[3] Univ Minnesota, Inst Supercomp, Minneapolis, MN 55455 USA
[4] Budapest Univ Technol & Econ, Dept Chem, H-1111 Budapest, Hungary
关键词
Aqueous solvation; Carbohydrate; Cellulose; Conformational analysis; Disaccharide; Mapping; HYDROGEN-BONDING SYSTEM; SYNCHROTRON X-RAY; MOLECULAR-DYNAMICS; QUANTUM-MECHANICS; CRYSTAL-STRUCTURE; CELLULOSE; SIMULATIONS; CONFORMERS; HYDRATION; ANALOGS;
D O I
10.1016/j.carres.2011.12.023
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Adiabatic phi/psi maps for cellobiose were prepared with B3LYP density functional theory. A mixed basis set was used for minimization, followed with 6-31+G(d) single-point calculations, with and without SMD continuum solvation. Different arrangements of the exocyclic groups (38 starting geometries) were considered for each phi/psi point. The vacuum calculations agreed with earlier computational and experimental results on the preferred gas phase conformation (anti-phi(H), syn-psi(H)), and the results from the solvated calculations were consistent with the (syn phi(H)/psi(H) conformations from condensed phases (crystals or solutions). Results from related studies were compared, and there is substantial dependence on the solvation model as well as arrangements of exocyclic groups. New stabilizing interactions were revealed by Atoms-In-Molecules theory. Published by Elsevier Ltd.
引用
收藏
页码:68 / 76
页数:9
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