Estimation of individual NH•••X (X = N, O) hydrogen bonding energies in some complexes involving multiple hydrogen bonds using NBO calculations

被引:8
作者
Bagheri, Sotoodeh [1 ]
Masoodi, Hamid Reza [1 ]
Abadi, Maryam Nosrat [1 ]
机构
[1] Vali E Asr Univ Rafsanjan, Dept Chem, Fac Sci, Rafsanjan, Iran
关键词
Individual hydrogen bond; Multiple hydrogen bonds; NBO; AIM; Ab initio; AB-INITIO CALCULATIONS; GUANINE-CYTOSINE; BASE-PAIRS; STRENGTH; SELECTIVITY; STABILITY; FOLDAMERS; ACCEPTOR; ATOMS;
D O I
10.1007/s00214-015-1738-z
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The aim of this work is to estimate the NII center dot center dot center dot X (X = N, O) individual hydrogen bond energies (E-HB) in several systems involving multiple hydrogen bonds using donor-acceptor interaction energies (E-(2)) by natural bond orbital analysis at MP2/6-311++G(d,p) level of theory. The substituted dimers of formylformamide and 2-iminoacetamide are selected to search for simple relations between E-(2) and individual EHB. The coefficient of determination between EHB and E-(2) in the base of linear equation is acceptable. The achieved equations are validated by using them on the substituted formylformamide and 2-iminoacetamide dimers and then applied to some multiple hydrogen-bonded systems. Frequency calculations indicate that there are the elongation of H-N bond due to formation of complex and redshift of stretching mode. With our method, the strength of each hydrogen bond is in good agreement with geometrical parameters and the results obtained by atoms in molecules and nuclear magnetic resonance analyses, indicating accuracy of the presented method.
引用
收藏
页数:8
相关论文
共 46 条
[1]   Toward reliable density functional methods without adjustable parameters: The PBE0 model [J].
Adamo, C ;
Barone, V .
JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (13) :6158-6170
[2]  
[Anonymous], 1995, NBO VERSION 3 1
[3]   Cooperative hydrogen-bonding in adenine-thymine and guanine-cytosine base pairs. Density functional theory and Moller-Plesset molecular orbital study [J].
Asensio, A ;
Kobko, N ;
Dannenberg, JJ .
JOURNAL OF PHYSICAL CHEMISTRY A, 2003, 107 (33) :6441-6443
[4]  
Bader R. F. W., 1994, ATOMS MOL QUANTUM TH
[5]   The interpretation of compliance constants and their suitability for characterizing hydrogen bonds and other weak interactions [J].
Baker, Jon ;
Pulay, Peter .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (35) :11324-11325
[6]   Hydrogen-bonded complexes of diaminopyridines and diaminotriazines: Opposite effect of acylation on complex stabilities [J].
Beijer, FH ;
Sijbesma, RP ;
Vekemans, JAJM ;
Meijer, EW ;
Kooijman, H ;
Spek, AL .
JOURNAL OF ORGANIC CHEMISTRY, 1996, 61 (18) :6371-6380
[7]  
Beijer FH, 1998, ANGEW CHEM INT EDIT, V37, P75, DOI 10.1002/(SICI)1521-3773(19980202)37:1/2<75::AID-ANIE75>3.0.CO
[8]  
2-R
[9]   Update of the AIM2000-program for atoms in molecules [J].
Biegler-König, F ;
Schönbohm, J .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2002, 23 (15) :1489-1494
[10]   CALCULATION OF SMALL MOLECULAR INTERACTIONS BY DIFFERENCES OF SEPARATE TOTAL ENERGIES - SOME PROCEDURES WITH REDUCED ERRORS [J].
BOYS, SF ;
BERNARDI, F .
MOLECULAR PHYSICS, 1970, 19 (04) :553-&