共 88 条
RNA polymerase II transcription: Structure and mechanism
被引:105
作者:

Liu, Xin
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Bushnell, David A.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Kornberg, Roger D.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA
机构:
[1] Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA
来源:
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS
|
2013年
/
1829卷
/
01期
关键词:
TFIIB;
Trigger loop;
Bridge helix;
Backtracked state;
Hybrid helix melting;
CORE PROMOTER ELEMENT;
TATA-BINDING PROTEIN;
C-TERMINAL DOMAIN;
DNA-BINDING;
CRYSTAL-STRUCTURE;
POLYCISTRONIC TRANSCRIPTION;
ARCHAEAL TRANSCRIPTION;
FACTOR REQUIREMENTS;
ELONGATION COMPLEX;
ACTIVE-CENTER;
D O I:
10.1016/j.bbagrm.2012.09.003
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
A minimal RNA polymerase II (pol II) transcription system comprises the polymerase and five general transcription factors (GTFs) TFIIB, -D, -E, -F, and -H. The addition of Mediator enables a response to regulatory factors. The GTFs are required for promoter recognition and the initiation of transcription. Following initiation, pol II alone is capable of RNA transcript elongation and of proofreading. Structural studies reviewed here reveal roles of GTFs in the initiation process and shed light on the transcription elongation mechanism. This article is part of a Special Issue entitled: RNA Polymerase II Transcript Elongation. (C) 2012 Elsevier B.V. All rights reserved.
引用
收藏
页码:2 / 8
页数:7
相关论文
共 88 条
[1]
Architecture of initiation-competent 12-subunit RNA polymerase II
[J].
Armache, KJ
;
Kettenberger, H
;
Cramer, P
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2003, 100 (12)
:6964-6968

Armache, KJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Munich, Inst Biochem, D-81377 Munich, Germany

Kettenberger, H
论文数: 0 引用数: 0
h-index: 0
机构: Univ Munich, Inst Biochem, D-81377 Munich, Germany

Cramer, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ Munich, Inst Biochem, D-81377 Munich, Germany
[2]
A ratchet mechanism of transcription elongation and its control
[J].
Bar-Nahum, G
;
Epshtein, V
;
Ruckenstein, AE
;
Rafikov, R
;
Mustaev, A
;
Nudler, E
.
CELL,
2005, 120 (02)
:183-193

Bar-Nahum, G
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Med Ctr, Dept Biochem, New York, NY 10016 USA

Epshtein, V
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Med Ctr, Dept Biochem, New York, NY 10016 USA

Ruckenstein, AE
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Med Ctr, Dept Biochem, New York, NY 10016 USA

Rafikov, R
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Med Ctr, Dept Biochem, New York, NY 10016 USA

Mustaev, A
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Med Ctr, Dept Biochem, New York, NY 10016 USA

Nudler, E
论文数: 0 引用数: 0
h-index: 0
机构:
NYU, Med Ctr, Dept Biochem, New York, NY 10016 USA NYU, Med Ctr, Dept Biochem, New York, NY 10016 USA
[3]
Temperature, template topology, and factor requirements of archaeal transcription
[J].
Bell, SD
;
Jaxel, C
;
Nadal, M
;
Kosa, PF
;
Jackson, SP
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
1998, 95 (26)
:15218-15222

Bell, SD
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Wellcome Trust, Canc Res Campaign, Inst Canc & Dev Biol, Cambridge CB2 1QR, England

Jaxel, C
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Wellcome Trust, Canc Res Campaign, Inst Canc & Dev Biol, Cambridge CB2 1QR, England

Nadal, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Wellcome Trust, Canc Res Campaign, Inst Canc & Dev Biol, Cambridge CB2 1QR, England

Kosa, PF
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Wellcome Trust, Canc Res Campaign, Inst Canc & Dev Biol, Cambridge CB2 1QR, England

Jackson, SP
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Wellcome Trust, Canc Res Campaign, Inst Canc & Dev Biol, Cambridge CB2 1QR, England
[4]
Mechanism and regulation of transcription in archaea
[J].
Bell, SD
;
Jackson, SP
.
CURRENT OPINION IN MICROBIOLOGY,
2001, 4 (02)
:208-213

Bell, SD
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Cambridge, Inst Canc & Dev Biol, Wellcome Trust & Canc Res Campaign, Cambridge CB2 1QR, England Univ Cambridge, Inst Canc & Dev Biol, Wellcome Trust & Canc Res Campaign, Cambridge CB2 1QR, England

论文数: 引用数:
h-index:
机构:
[5]
Organization of an Activator-Bound RNA Polymerase Holoenzyme
[J].
Bose, Daniel
;
Pape, Tillmann
;
Burrows, Patricia C.
;
Rappas, Mathieu
;
Wigneshweraraj, Siva R.
;
Buck, Martin
;
Zhang, Xiaodong
.
MOLECULAR CELL,
2008, 32 (03)
:337-346

Bose, Daniel
论文数: 0 引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Struct Biol Ctr,Div Mol Biosci, London SW7 2AZ, England Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Struct Biol Ctr,Div Mol Biosci, London SW7 2AZ, England

Pape, Tillmann
论文数: 0 引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Struct Biol Ctr,Div Mol Biosci, London SW7 2AZ, England Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Struct Biol Ctr,Div Mol Biosci, London SW7 2AZ, England

Burrows, Patricia C.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Div Biol, London SW7 2AZ, England Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Struct Biol Ctr,Div Mol Biosci, London SW7 2AZ, England

Rappas, Mathieu
论文数: 0 引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Struct Biol Ctr,Div Mol Biosci, London SW7 2AZ, England Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Struct Biol Ctr,Div Mol Biosci, London SW7 2AZ, England

Wigneshweraraj, Siva R.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Fac Med, Dept Microbiol, Div Invest Sci, London SW7 2AZ, England Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Struct Biol Ctr,Div Mol Biosci, London SW7 2AZ, England

Buck, Martin
论文数: 0 引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Div Biol, London SW7 2AZ, England Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Struct Biol Ctr,Div Mol Biosci, London SW7 2AZ, England

Zhang, Xiaodong
论文数: 0 引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Struct Biol Ctr,Div Mol Biosci, London SW7 2AZ, England Univ London Imperial Coll Sci Technol & Med, Fac Nat Sci, Dept Life Sci, Struct Biol Ctr,Div Mol Biosci, London SW7 2AZ, England
[6]
Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 angstroms
[J].
Bushnell, DA
;
Westover, KD
;
Davis, RE
;
Kornberg, RD
.
SCIENCE,
2004, 303 (5660)
:983-988

Bushnell, DA
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Westover, KD
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Davis, RE
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Kornberg, RD
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA
[7]
Complete, 12-subunit RNA polymerase II at 4.1-Å resolution:: Implications for the initiation of transcription
[J].
Bushnell, DA
;
Kornberg, RD
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2003, 100 (12)
:6969-6973

Bushnell, DA
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Kornberg, RD
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA
[8]
Structural basis of transcription:: α-Amanitin-RNA polymerase II cocrystal at 2.8 A resolution
[J].
Bushnell, DA
;
Cramer, P
;
Kornberg, RD
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2002, 99 (03)
:1218-1222

Bushnell, DA
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Cramer, P
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Kornberg, RD
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA
[9]
Nucleic acid polymerases use a general acid for nucleotidyl transfer
[J].
Castro, Christian
;
Smidansky, Eric D.
;
Arnold, Jamie J.
;
Maksimchuk, Kenneth R.
;
Moustafa, Ibrahim
;
Uchida, Akira
;
Gotte, Matthias
;
Konigsberg, William
;
Cameron, Craig E.
.
NATURE STRUCTURAL & MOLECULAR BIOLOGY,
2009, 16 (02)
:212-218

Castro, Christian
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA

Smidansky, Eric D.
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA

Arnold, Jamie J.
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA

Maksimchuk, Kenneth R.
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA

Moustafa, Ibrahim
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA

Uchida, Akira
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA

Gotte, Matthias
论文数: 0 引用数: 0
h-index: 0
机构:
McGill Univ, Dept Microbiol & Immunol, Montreal, PQ H3A 2B4, Canada Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA

Konigsberg, William
论文数: 0 引用数: 0
h-index: 0
机构:
Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA

Cameron, Craig E.
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA
[10]
The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex
[J].
Chen, Hung-Ta
;
Warfield, Linda
;
Hahn, Steven
.
NATURE STRUCTURAL & MOLECULAR BIOLOGY,
2007, 14 (08)
:696-703

Chen, Hung-Ta
论文数: 0 引用数: 0
h-index: 0
机构:
Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA

Warfield, Linda
论文数: 0 引用数: 0
h-index: 0
机构:
Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA

Hahn, Steven
论文数: 0 引用数: 0
h-index: 0
机构:
Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA