lincRNAs: Genomics, Evolution, and Mechanisms

被引:2156
作者
Ulitsky, Igor [1 ,2 ,3 ]
Bartel, David P. [1 ,2 ,3 ]
机构
[1] Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
[2] MIT, Howard Hughes Med Inst, Cambridge, MA 02139 USA
[3] MIT, Dept Biol, Cambridge, MA 02139 USA
关键词
LONG NONCODING RNA; PROTEIN-CODING GENE; X-CHROMOSOME INACTIVATION; XIST GENE; COMPUTATIONAL IDENTIFICATION; TRANSCRIPTIONAL NOISE; ACTIVE CHROMATIN; WIDE ANALYSIS; REVEALS; EXPRESSION;
D O I
10.1016/j.cell.2013.06.020
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Long intervening noncoding RNAs (lincRNAs) are transcribed from thousands of loci in mammalian genomes and might play widespread roles in gene regulation and other cellular processes. This Review outlines the emerging understanding of lincRNAs in vertebrate animals, with emphases on how they are being identified and current conclusions and questions regarding their genomics, evolution and mechanisms of action.
引用
收藏
页码:26 / 46
页数:21
相关论文
共 182 条
  • [1] Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays
    Agarwal, Ashish
    Koppstein, David
    Rozowsky, Joel
    Sboner, Andrea
    Habegger, Lukas
    Hillier, LaDeana W.
    Sasidharan, Rajkumar
    Reinke, Valerie
    Waterston, Robert H.
    Gerstein, Mark
    [J]. BMC GENOMICS, 2010, 11
  • [2] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    Altschul, SF
    Madden, TL
    Schaffer, AA
    Zhang, JH
    Zhang, Z
    Miller, W
    Lipman, DJ
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
  • [3] Tsx Produces a Long Noncoding RNA and Has General Functions in the Germline, Stem Cells, and Brain
    Anguera, Montserrat C.
    Ma, Weiyuan
    Clift, Danielle
    Namekawa, Satoshi
    Kelleher, Raymond J., III
    Lee, Jeannie T.
    [J]. PLOS GENETICS, 2011, 7 (09):
  • [4] Regulation of X-chromosome inactivation by the X-inactivation centre
    Augui, Sandrine
    Nora, Elphege P.
    Heard, Edith
    [J]. NATURE REVIEWS GENETICS, 2011, 12 (06) : 429 - 442
  • [5] CRITICA: Coding region identification tool invoking comparative analysis
    Badger, JH
    Olsen, GJ
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (04) : 512 - 524
  • [6] MicroRNAs: Target Recognition and Regulatory Functions
    Bartel, David P.
    [J]. CELL, 2009, 136 (02) : 215 - 233
  • [7] PNA interference mapping demonstrates functional domains in the noncoding RNA Xist
    Beletskii, A
    Hong, YK
    Pehrson, J
    Egholm, M
    Strauss, WM
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (16) : 9215 - 9220
  • [8] RETRACTED: The Noncoding RNA Mistral Activates Hoxa6 and Hoxa7 Expression and Stem Cell Differentiation by Recruiting MLL1 to Chromatin (Retracted Article)
    Bertani, Stephane
    Sauer, Silvia
    Bolotin, Eugene
    Sauer, Frank
    [J]. MOLECULAR CELL, 2011, 43 (06) : 1040 - 1046
  • [9] Global identification of human transcribed sequences with genome tiling arrays
    Bertone, P
    Stolc, V
    Royce, TE
    Rozowsky, JS
    Urban, AE
    Zhu, XW
    Rinn, JL
    Tongprasit, W
    Samanta, M
    Weissman, S
    Gerstein, M
    Snyder, M
    [J]. SCIENCE, 2004, 306 (5705) : 2242 - 2246
  • [10] First Exon Length Controls Active Chromatin Signatures and Transcription
    Bieberstein, Nicole I.
    Oesterreich, Fernando Carrillo
    Straube, Korinna
    Neugebauer, Karla M.
    [J]. CELL REPORTS, 2012, 2 (01): : 62 - 68