Towards the virtual screening of BIK inhibitors with the homology-modeled protein structure

被引:7
|
作者
Kondagari, Bhargavi [1 ]
Dulapalli, Ramasree [2 ]
Murthy, Dwarkanath Krishna [1 ]
Vuruputuri, Uma [2 ]
机构
[1] Osmania Univ, Univ Coll Sci, Dept Genet, Hyderabad 500007, Andhra Pradesh, India
[2] Osmania Univ, Nizam Coll Autonomous, Dept Chem, Hyderabad 500001, Andhra Pradesh, India
关键词
ADME; BIK; Cancer; Glide; Homology modeling; Virtual screening; PRO-APOPTOTIC PROTEIN; BCL-2; FAMILY-MEMBERS; BAK; DOCKING; CLASSIFICATION; PREDICTION; INDUCTION; INTERACTS; ALIGNMENT; RELEASE;
D O I
10.1007/s00044-012-0105-z
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Induction of apoptosis in tumor cells through direct triggering of the Bcl-2 regulated intrinsic pathway by small molecules carries great potential to overcome the shortcomings of current anticancer therapies. The Bcl-2 family members are crucial regulators of apoptosis. The BIK protein, is an important member of the Bcl-2 family and an attractive drug target. Homology model of BIK was developed based on the crystal structures of appropriate template. We have employed structure-based virtual screening techniques using Glide 5.6 to identify lead like molecules from an in-house library. The database has yielded 345 hits, the top scoring 60 ligands were selected and a pharmacokinetic analysis (ADME) was performed. We have identified six ligands from the combined approach of virtual screening followed by ADME that can work against BIK.
引用
收藏
页码:1184 / 1196
页数:13
相关论文
共 50 条
  • [1] Towards the virtual screening of BIK inhibitors with the homology-modeled protein structure
    Bhargavi Kondagari
    Ramasree Dulapalli
    Dwarkanath Krishna Murthy
    Uma Vuruputuri
    Medicinal Chemistry Research, 2013, 22 : 1184 - 1196
  • [2] Toward the virtual, screening of α-glucosidase inhibitors with the homology-modeled protein structure
    Park, Jung-Hum
    Ko, Sungmin
    Park, Hwangseo
    BULLETIN OF THE KOREAN CHEMICAL SOCIETY, 2008, 29 (05) : 921 - 927
  • [3] Toward the virtual screening of α-glucosidase inhibitors with the homology-modeled protein structure
    Department of Bioscience and Biotechnology, Sejong University, Seoul 143-747, Korea, Republic of
    Bull. Korean Chem. Soc., 2008, 5 (921-927): : 921 - 927
  • [4] Discovery of novel α-glucosidase inhibitors based on the virtual screening with the homology-modeled protein structure
    Park, Hwangseo
    Hwang, Kyo Yeol
    Oh, Kyung Hwan
    Kim, Young Hoon
    Lee, Jae Yeon
    Kim, Keun
    BIOORGANIC & MEDICINAL CHEMISTRY, 2008, 16 (01) : 284 - 292
  • [5] Identification of Novel Inhibitors of Tropomyosin-Related Kinase A through the Structure-Based Virtual Screening with Homology-Modeled Protein Structure
    Park, Hwangseo
    Chi, Okyung
    Kim, Jinhee
    Hong, Sungwoo
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2011, 51 (11) : 2986 - 2993
  • [6] Toward the virtual screening of Cdc25A phosphatase inhibitors with the homology modeled protein structure
    Park, Hwangseo
    Jeon, Young Ho
    JOURNAL OF MOLECULAR MODELING, 2008, 14 (09) : 833 - 841
  • [7] Toward the virtual screening of Cdc25A phosphatase inhibitors with the homology modeled protein structure
    Hwangseo Park
    Young Ho Jeon
    Journal of Molecular Modeling, 2008, 14
  • [8] Discovery of novel inhibitors of Streptococcus pneumoniae based on the virtual screening with the homology-modeled structure of histidine kinase (VicK)
    Nan Li
    Fei Wang
    Siqiang Niu
    Ju Cao
    Kaifeng Wu
    Youqiang Li
    Nanlin Yin
    Xuemei Zhang
    Weiliang Zhu
    Yibing Yin
    BMC Microbiology, 9
  • [9] Discovery of Novel DUSP16 Phosphatase Inhibitors through Virtual Screening with Homology Modeled Protein Structure
    Park, Hwangseo
    Park, So Ya
    Nam, Sang-Won
    Ryu, Seong Eon
    JOURNAL OF BIOMOLECULAR SCREENING, 2014, 19 (10) : 1383 - 1390
  • [10] IKKβ inhibitors identification part I: Homology model assisted structure based virtual screening
    Nagarajan, Shanthi
    Doddareddy, Munikumar Reddy
    Choo, Hyunah
    Cho, Yong Seo
    Oh, Kwang-Seok
    Lee, Byung Ho
    Pae, Ae Nim
    BIOORGANIC & MEDICINAL CHEMISTRY, 2009, 17 (07) : 2759 - 2766