Detecting mitotic cells in HEp-2 images as anomalies via one class classifier

被引:19
作者
Gupta, Krati [1 ]
Bhaysar, Arnav [1 ]
Sao, Anil K. [1 ]
机构
[1] Indian Inst Technol Mandi, Sch Comp & Elect Engn, Mandi, Himachal Prades, India
关键词
Auto-immune disorders; HEp-2; cells; Mitotic cells; One class classifiers; Support vector machines; ANTINUCLEAR ANTIBODIES; PATTERN-RECOGNITION; SUPPORT-VECTOR; DIAGNOSIS; FEATURES; SYSTEM;
D O I
10.1016/j.compbiomed.2019.103328
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
We propose a novel framework for classification of mitotic v/s non-mitotic cells in a Computer Aided Diagnosis (CAD) system for Anti-Nuclear Antibodies (ANA) detection. In the proposed work, due to unique characteristics (the rare occurrence) of the mitotic cells, their identification is posed as an anomaly detection approach. This will resolve the issue of data imbalance, which can arise in the traditional binary classification paradigm for mitotic v/s non-mitotic cell image classification. Here, the characteristics of only non-mitotic/interphase cells are captured using a well-defined feature representation to characterize the non-mitotic class distribution well, and the mitotic class is posed as an anomalous class. This framework requires training data only for the majority (non-mitotic) class, to build the classification model. The feature representation of the non-mitotic class includes morphology, texture, and Convolutional Neural Network (CNN) based feature representations, coupled with Bag-of-Words (BoW) and Spatial Pyramid Pooling (SPP) based summarization techniques. For classification, in this work, we employ the One-Class Support Vector Machines (OC-SVM). The proposed classification framework is validated on a publicly available dataset, and across various experiments, we demonstrate comparable or better performance over binary classification, attaining 0.99 (max.) F-Score in one case. The proposed framework proves to be an effective way to solve the mentioned problem statement, where there are less number of samples in one of the classes.
引用
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页数:13
相关论文
共 58 条
[11]   Benchmarking HEp-2 Cells Classification Methods [J].
Foggia, Pasquale ;
Percannella, Gennaro ;
Soda, Paolo ;
Vento, Mario .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2013, 32 (10) :1878-1889
[12]   A Review on Ensembles for the Class Imbalance Problem: Bagging-, Boosting-, and Hybrid-Based Approaches [J].
Galar, Mikel ;
Fernandez, Alberto ;
Barrenechea, Edurne ;
Bustince, Humberto ;
Herrera, Francisco .
IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS PART C-APPLICATIONS AND REVIEWS, 2012, 42 (04) :463-484
[13]  
García V, 2009, LECT NOTES COMPUT SC, V5524, P441, DOI 10.1007/978-3-642-02172-5_57
[14]  
Garg R, 2014, 2014 INTERNATIONAL CONFERENCE ON COMPUTING FOR SUSTAINABLE GLOBAL DEVELOPMENT (INDIACOM), P6, DOI 10.1109/IndiaCom.2014.6828003
[15]  
Gonzalez R.C., 2008, DIGITAL IMAGE PROCES
[16]   Cell image classification by a scale and rotation invariant dense local descriptor [J].
Gragnaniello, Diego ;
Sansone, Carlo ;
Verdoliva, Luisa .
PATTERN RECOGNITION LETTERS, 2016, 82 :72-78
[17]   Antinuclear antibody testing: Methods, indications, and interpretation [J].
Greidinger, EL ;
Hoffman, RW .
LABORATORY MEDICINE, 2003, 34 (02) :113-117
[18]   Mitotic Cells Detection for HEp-2 Specimen Images using Threshold-based Evaluation Scheme [J].
Gupta, Krati ;
Bhaysar, Arnav ;
Sao, Anil K. .
MEDICAL IMAGING 2018: DIGITAL PATHOLOGY, 2018, 10581
[19]  
Gupta K, 2015, IEEE IMAGE PROC, P641, DOI 10.1109/ICIP.2015.7350877
[20]   TRANSFER LEARNING OF A CONVOLUTIONAL NEURAL NETWORK FOR HEP-2 CELL IMAGE CLASSIFICATION [J].
Ha Tran Hong Phan ;
Kumar, Ashnil ;
Kim, Jinman ;
Feng, Dagan .
2016 IEEE 13TH INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI), 2016, :1208-1211