Modeling Microtubule Counterion Distributions and Conductivity Using the Poisson-Boltzmann Equation

被引:13
|
作者
Eakins, Boden B. [1 ]
Patel, Sahil D. [2 ]
Kalra, Aarat P. [3 ]
Rezania, Vahid [4 ]
Shankar, Karthik [1 ]
Tuszynski, Jack A. [5 ,6 ,7 ]
机构
[1] Univ Alberta, Dept Elect & Comp Engn, Edmonton, AB, Canada
[2] Univ Calif Santa Barbara, Dept Elect & Comp Engn, Santa Barbara, CA 93106 USA
[3] Princeton Univ, Dept Chem, Princeton, NJ 08544 USA
[4] MacEwan Univ, Dept Phys Sci, Edmonton, AB, Canada
[5] Univ Alberta, Dept Phys, Edmonton, AB, Canada
[6] Politecn Torino, Dept Mech & Aerosp Engn, Turin, Italy
[7] Univ Alberta, Dept Oncol, Edmonton, AB, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
cytoskeleton; microtubules; counter-ions; conductivity; bio-electricity; Poisson-Boltzmann; COMSOL;
D O I
10.3389/fmolb.2021.650757
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Microtubules are highly negatively charged proteins which have been shown to behave as bio-nanowires capable of conducting ionic currents. The electrical characteristics of microtubules are highly complicated and have been the subject of previous work; however, the impact of the ionic concentration of the buffer solution on microtubule electrical properties has often been overlooked. In this work we use the non-linear Poisson Boltzmann equation, modified to account for a variable permittivity and a Stern Layer, to calculate counterion concentration profiles as a function of the ionic concentration of the buffer. We find that for low-concentration buffers ([KCl] from 10 mu M to 10 mM) the counterion concentration is largely independent of the buffer's ionic concentration, but for physiological-concentration buffers ([KCl] from 100 to 500 mM) the counterion concentration varies dramatically with changes in the buffer's ionic concentration. We then calculate the conductivity of microtubule-counterion complexes, which are found to be more conductive than the buffer when the buffer's ionic concentrations is less than approximate to 100 mM and less conductive otherwise. These results demonstrate the importance of accounting for the ionic concentration of the buffer when analyzing microtubule electrical properties both under laboratory and physiological conditions. We conclude by calculating the basic electrical parameters of microtubules over a range of ionic buffer concentrations applicable to nanodevice and medical applications.
引用
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页数:13
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