YADA: a tool for taking the most out of high-resolution spectra

被引：65

作者：

Carvalho, Paulo C. ^{[1
,2
]}

Xu, Tao ^{[2
]}

Han, Xuemei ^{[2
]}

Cociorva, Daniel ^{[2
]}

Barbosa, Valmir C. ^{[1
]}

Yates, John R., III ^{[2
]}

机构：

[1] Univ Fed Rio de Janeiro, COPPE, Syst Engn & Comp Sci Program, BR-21941972 Rio De Janeiro, Brazil

[2] Scripps Res Inst, Dept Physiol Chem, La Jolla, CA 92037 USA

来源：

BIOINFORMATICS | 2009年 / 25卷 / 20期

基金：

美国国家卫生研究院;

关键词：

TANDEM MASS-SPECTRA; PROTEIN IDENTIFICATION; SPECTROMETRY; DATABASE;

D O I：

10.1093/bioinformatics/btp489

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to the corresponding tandem mass spectrum, and account for different co-fragmenting ion species (multiplexed spectra). We describe how YADA enables a pipeline consisting of ProLuCID and DTASelect for analyzing large-scale middle-down proteomics data.

引用

页码：2734 / 2736

页数：3

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