Structural features and lipid binding domain of tubulin on biomimetic mitochondrial membranes

被引:35
作者
Hoogerheide, David P. [1 ]
Noskov, Sergei Y. [2 ]
Jacobs, Daniel [3 ]
Bergdoll, Lucie [4 ]
Silin, Vitalii [1 ,5 ]
Worcester, David L. [1 ]
Abramson, Jeff [6 ]
Nanda, Hirsh [1 ,7 ]
Rostovtseva, Tatiana K. [3 ]
Bezrukov, Sergey M. [3 ]
机构
[1] NIST, Ctr Neutron Res, Gaithersburg, MD 20899 USA
[2] Univ Calgary, Dept Biol Sci, Ctr Mol Simulat, Calgary, AB T2N 1N4, Canada
[3] Eunice Kennedy Shriver Natl Inst Child Hlth & Hum, Sect Mol Transport, NIH, Bethesda, MD 20892 USA
[4] Univ Calif Los Angeles, David Geffen Sch Med, Dept Physiol, Los Angeles, CA 90095 USA
[5] Univ Maryland, Inst Biosci & Biotechnol Res, Rockville, MD 20850 USA
[6] Tata Inst Fundamental Res, Natl Ctr Biol Sci, Inst Stem Cell Biol & Regenerat Med, Bangalore 560065, Karnataka, India
[7] Carnegie Mellon Univ, Dept Phys, Pittsburgh, PA 15213 USA
基金
美国国家科学基金会;
关键词
dimeric tubulin; protein-lipid interactions; neutron reflectometry; molecular dynamics; peripheral membrane proteins; DEPENDENT ANION CHANNEL; MOLECULAR-DYNAMICS SIMULATIONS; FORCE-FIELD; POSTTRANSLATIONAL MODIFICATIONS; ELECTRON CRYSTALLOGRAPHY; SACCHAROMYCES-CEREVISIAE; PHOSPHOLIPID-VESICLES; NEUTRON REFLECTOMETRY; PROTEIN INTERACTIONS; BILAYER-MEMBRANES;
D O I
10.1073/pnas.1619806114
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Dimeric tubulin, an abundant water-soluble cytosolic protein known primarily for its role in the cytoskeleton, is routinely found to be associated with mitochondrial outer membranes, although the structure and physiological role of mitochondria-bound tubulin are still unknown. There is also no consensus on whether tubulin is a peripheral membrane protein or is integrated into the outer mitochondrial membrane. Here the results of five independent techniques-surface plasmon resonance, electrochemical impedance spectroscopy, bilayer overtone analysis, neutron reflectometry, and molecular dynamics simulations-suggest that a-tubulin's amphipathic helix H10 is responsible for peripheral binding of dimeric tubulin to biomimetic "mitochondrial" membranes in a manner that differentiates between the two primary lipid headgroups found in mitochondrial membranes, phosphatidylethanolamine and phosphatidylcholine. The identification of the tubulin dimer orientation and membrane-binding domain represents an essential step toward our understanding of the complex mechanisms by which tubulin interacts with integral proteins of the mitochondrial outer membrane and is important for the structure-inspired design of tubulin-targeting agents.
引用
收藏
页码:E3622 / E3631
页数:10
相关论文
共 78 条
[1]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[2]   EVIDENCE FOR TUBULIN-BINDING SITES ON CELLULAR MEMBRANES - PLASMA-MEMBRANES, MITOCHONDRIAL-MEMBRANES, AND SECRETORY GRANULE MEMBRANES [J].
BERNIERVALENTIN, F ;
AUNIS, D ;
ROUSSET, B .
JOURNAL OF CELL BIOLOGY, 1983, 97 (01) :209-216
[3]   CHARMM: The Biomolecular Simulation Program [J].
Brooks, B. R. ;
Brooks, C. L., III ;
Mackerell, A. D., Jr. ;
Nilsson, L. ;
Petrella, R. J. ;
Roux, B. ;
Won, Y. ;
Archontis, G. ;
Bartels, C. ;
Boresch, S. ;
Caflisch, A. ;
Caves, L. ;
Cui, Q. ;
Dinner, A. R. ;
Feig, M. ;
Fischer, S. ;
Gao, J. ;
Hodoscek, M. ;
Im, W. ;
Kuczera, K. ;
Lazaridis, T. ;
Ma, J. ;
Ovchinnikov, V. ;
Paci, E. ;
Pastor, R. W. ;
Post, C. B. ;
Pu, J. Z. ;
Schaefer, M. ;
Tidor, B. ;
Venable, R. M. ;
Woodcock, H. L. ;
Wu, X. ;
Yang, W. ;
York, D. M. ;
Karplus, M. .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2009, 30 (10) :1545-1614
[4]  
CARON JM, 1980, J CELL BIOL, V87, pA255
[5]   Tubulin is an inherent component of mitochondrial membranes that interacts with the voltage-dependent anion channel [J].
Carré, M ;
André, N ;
Carles, G ;
Borghi, H ;
Brichese, L ;
Briand, C ;
Braguer, D .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (37) :33664-33669
[6]   Membrane-protein interactions in cell signaling and membrane trafficking [J].
Cho, WH ;
Stahelin, RV .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 2005, 34 :119-151
[7]   HELIX TO HELIX PACKING IN PROTEINS [J].
CHOTHIA, C ;
LEVITT, M ;
RICHARDSON, D .
JOURNAL OF MOLECULAR BIOLOGY, 1981, 145 (01) :215-250
[8]   Low-complexity regions within protein sequences have position-dependent roles [J].
Coletta, Alain ;
Pinney, John W. ;
Solis, David Y. Weiss ;
Marsh, James ;
Pettifer, Steve R. ;
Attwood, Teresa K. .
BMC SYSTEMS BIOLOGY, 2010, 4
[9]   Membrane lipid compositional sensing by the inducible amphipathic helix of CCT [J].
Cornell, Rosemary B. .
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS, 2016, 1861 (08) :847-861
[10]   HIV-1 Gag Extension: Conformational Changes Require Simultaneous Interaction with Membrane and Nucleic Acid [J].
Datta, Siddhartha A. K. ;
Heinrich, Frank ;
Raghunandan, Sindhu ;
Krueger, Susan ;
Curtis, Joseph E. ;
Rein, Alan ;
Nanda, Hirsh .
JOURNAL OF MOLECULAR BIOLOGY, 2011, 406 (02) :205-214