Deciphering Intrinsic Deactivation/Isomerization Routes in a Phytochrome Chromophore Model

被引:26
作者
Altoe, Piero [2 ]
Climent, Teresa [1 ]
De Fusco, Giulia C. [3 ]
Stenta, Marco [2 ]
Bottoni, Andrea [2 ]
Serrano-Andres, Luis [1 ]
Merchan, Manuela [1 ]
Orlandi, Giorgio [2 ]
Garavelli, Marco [2 ]
机构
[1] Univ Valencia, Inst Ciencia Mol, ES-46071 Valencia, Spain
[2] Univ Bologna, Dipartimento Chim G Ciamician, I-40126 Bologna, Italy
[3] Univ London Imperial Coll Sci Technol & Med, Dept Chem, Thomas Young Ctr, London SW7 2AZ, England
关键词
STRUCTURAL-CHANGES; RESONANCE RAMAN; STATE; FLUORESCENCE; SPECTROSCOPY; PHOTOTRANSFORMATION; AGP1; FORM;
D O I
10.1021/jp904669x
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
High level ab initio correlated (CASPT2) computations have been used to elucidate the details of the photoinduced molecular motion and decay mechanisms of a realistic phytochrome chromophore model in vacuo and to explore the reasons underneath its photophysical/photochemical properties. Competitive deactivation routes emerge that unveil the primary photochemical event and the intrinsic photoisomerization ability of this system. The emerged in vacuo based static (i.e., nondynamical) reactivity model accounts for the formation of different excited state intermediates and suggests a qualitative rationale for the short (picosecond) excited state lifetime and ultrafast decay of the emission, its small quantum yield, and the multiexponential decay observed in both solvent and phytochromes. It is thus tentatively suggested that this is a more general deactivation scheme for photoexcited phytochrome chromophores that is independent of the surrounding environment. Spectroscopic properties have also been simulated in both isolated conditions and the protein that satisfactorily match experimental data. For this purpose, preliminary hybrid QM/MM computationsat the Correlated (CASPT2) level have been used in the protein and arc reported here for the first time.
引用
收藏
页码:15067 / 15073
页数:7
相关论文
共 40 条
[1]   ELECTRON CORRELATION IN TETRAPYRROLES - AB-INITIO CALCULATIONS ON PORPHYRIN AND THE TAUTOMERS OF CHLORIN [J].
ALMLOF, J ;
FISCHER, TH ;
GASSMAN, PG ;
GHOSH, A ;
HASER, M .
JOURNAL OF PHYSICAL CHEMISTRY, 1993, 97 (42) :10964-10970
[2]   A tunable QM/MM approach to chemical reactivity, structure and physico-chemical properties prediction [J].
Altoe, Piero ;
Stenta, Marco ;
Bottoni, Andrea ;
Garavelli, Marco .
THEORETICAL CHEMISTRY ACCOUNTS, 2007, 118 (01) :219-240
[3]   2ND-ORDER PERTURBATION-THEORY WITH A COMPLETE ACTIVE SPACE SELF-CONSISTENT FIELD REFERENCE FUNCTION [J].
ANDERSSON, K ;
MALMQVIST, PA ;
ROOS, BO .
JOURNAL OF CHEMICAL PHYSICS, 1992, 96 (02) :1218-1226
[4]  
ANDERSSON K, 2004, MOLCAS 6 0
[5]  
[Anonymous], 2016, GAUSSIAN 16 REV B01
[6]   Which factors determine the acidity of the phytochromobilin chromophore of plant phytochrome? [J].
Borg, O. Anders ;
Durbeej, Bo .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2008, 10 (18) :2528-2537
[7]   EXCITED-STATE RELAXATIONS OF PHYTOCHROME STUDIED BY FEMTOSECOND SPECTROSCOPY [J].
BUCHLER, R ;
HERMANN, G ;
LAP, DV ;
RENTSCH, S .
CHEMICAL PHYSICS LETTERS, 1995, 233 (5-6) :514-518
[8]   The Amber biomolecular simulation programs [J].
Case, DA ;
Cheatham, TE ;
Darden, T ;
Gohlke, H ;
Luo, R ;
Merz, KM ;
Onufriev, A ;
Simmerling, C ;
Wang, B ;
Woods, RJ .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2005, 26 (16) :1668-1688
[9]   Ultrafast excited-state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy [J].
Dasgupta, Jyotishman ;
Frontiera, Renee R. ;
Taylor, Keenan C. ;
Lagarias, J. Clark ;
Mathies, Richard A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (06) :1784-1789
[10]   PICOSECOND SPECTROSCOPY OF DIHYDRO BILIVERDIN [J].
DITTO, M ;
BRUNNER, H ;
LIPPITSCH, ME .
CHEMICAL PHYSICS LETTERS, 1991, 185 (1-2) :61-64