Dynamics and the Free-Energy Landscape of Proteins, Explored with the Mossbauer Effect and Quasi-Elastic Neutron Scattering

被引:18
作者
Frauenfelder, Hans [1 ]
Young, Robert D. [2 ]
Fenimore, Paul W. [1 ]
机构
[1] Los Alamos Natl Lab, Los Alamos, NM 87545 USA
[2] Arizona State Univ, Ctr Theoret Biol Phys, Tempe, AZ 85287 USA
基金
美国国家科学基金会;
关键词
MACROMOLECULAR SYSTEMS; RESONANCE ABSORPTION; GAMMA-RESONANCE; FLUCTUATIONS; MYOGLOBIN; SPECTROSCOPY; TEMPERATURE; CRYSTALS; MOTIONS; TRANSITION;
D O I
10.1021/jp403832n
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The Mossbauer effect and quasi-elastic neutron scattering (QENS) from hydrated proteins yield sharp elastic lines that are accompanied by broad wings. Conventionally, the elastic line and the broad wings are treated as separate phenomena. We show that there is no separation; the entire spectrum consists of Lorentzians with the natural line width. In protein crystals, the shifts of the individual lines from the elastic center above about 150 K are caused by beta fluctuations in the hydration shell. Vibrations cause shifts in the entire temperature range but are best seen below about 150 K. We construct a microscopic model for the dynamics that is based on a random walk of the proteins in their free-energy landscape. The model yields approximate values for the steps in the energy landscape. Remarkably, the quantum electrodynamic concept of gamma rays is needed to justify the model.
引用
收藏
页码:13301 / 13307
页数:7
相关论文
共 50 条
[1]  
ABRAGAM A, 1964, EFFET MOSSBAUER
[2]  
Achterhold K, 2002, PHYS REV E, V65, DOI 10.1103/PhysRevE.65.051916
[3]   Dynamical properties of the hydration shell of fully deuterated myoglobin [J].
Achterhold, Klaus ;
Ostermann, Andreas ;
Moulin, Martine ;
Haertlein, Michael ;
Unruh, Tobias ;
Parak, Fritz G. .
PHYSICAL REVIEW E, 2011, 84 (04)
[4]   Fe vibrational Spectroscopy of myoglobin and cytochrome f [J].
Adams, KL ;
Tsoi, S ;
Yan, JS ;
Durbin, SM ;
Ramdas, AK ;
Cramer, WA ;
Sturhahn, W ;
Alp, EE ;
Schulz, C .
JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (01) :530-536
[5]   PROTEIN STATES AND PROTEIN QUAKES [J].
ANSARI, A ;
BERENDZEN, J ;
BOWNE, SF ;
FRAUENFELDER, H ;
IBEN, IET ;
SAUKE, TB ;
SHYAMSUNDER, E ;
YOUNG, RD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1985, 82 (15) :5000-5004
[6]   DYNAMICS OF LIGAND-BINDING TO MYOGLOBIN [J].
AUSTIN, RH ;
BEESON, KW ;
EISENSTEIN, L ;
FRAUENFELDER, H ;
GUNSALUS, IC .
BIOCHEMISTRY, 1975, 14 (24) :5355-5373
[7]   Heat capacities of solid state proteins: implications for protein stability in solution [J].
Bakk, A .
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2002, 313 (3-4) :540-548
[8]   What vibrations tell us about proteins [J].
Barth, A ;
Zscherp, C .
QUARTERLY REVIEWS OF BIOPHYSICS, 2002, 35 (04) :369-430
[9]  
Bée M, 2003, CHEM PHYS, V292, P121, DOI [10.1016/S0301-0104(03)00257-X, 10.1016/S0301 -0104(03)00257-X]
[10]   Protein fluctuations explored by inelastic neutron scattering and dielectric relaxation spectroscopy [J].
Chen, G. ;
Fenimore, P. W. ;
Frauenfelder, H. ;
Mezei, F. ;
Swenson, J. ;
Young, R. D. .
PHILOSOPHICAL MAGAZINE, 2008, 88 (33-35) :3877-3883