Characterization of the complete chloroplast genome ofRumex nepalensis(Polygonaceae)

被引:2
|
作者
Wu, Chun-Xia [1 ]
Zhai, Cai-Cai [1 ]
Fan, Shou-Jin [1 ]
机构
[1] Shandong Normal Univ, Coll Life Sci, Key Lab Plant Stress Res, Jinan, Shandong, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
关键词
Plastome; phylogeny; Rumex nepalensis;
D O I
10.1080/23802359.2020.1778568
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Rumex nepalensis(Polygonaceae) is a fairly common perennial herb of high altitudes. In this study, we determined the complete chloroplast genome (plastome) ofR. nepalensiswith genome-skimming method. The complete plastome ofR. nepalensiswas 159,110 bp in length with a quadripartite structure, including a large single-copy region of 84,810 bp, a small single-copy region of 13,044 bp, and a pair of inverted repeats regions of 30,628 bp. The overall guanine-cytosine (GC) content was 37.5%. A total of 112 unique genes was annotated in this plastome, including 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. In the ML tree,R. nepalensiswas sister toR. crispus, andRumexwas sister to a clade comprisingRheumandOxyriawithin Polygonaceae famliy.
引用
收藏
页码:2458 / 2459
页数:2
相关论文
共 50 条
  • [1] The complete chloroplast genome sequence ofRumex nepalensisSpreng
    Liu, Jiang
    Wei, Yongsheng
    Lan, Xiaozhong
    Zhao, Kaihui
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 3243 - 3244
  • [2] The complete chloroplast genome of Piptanthus nepalensis, a medicinal plant
    Sun, Huigai
    Zheng, Kaiyan
    Han, Xiaowei
    Song, Junna
    Li, Yang
    Du, Lei
    Zheng, Yuguang
    Ma, Donglai
    MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (05): : 796 - 797
  • [3] The complete chloroplast genome of Persicaria perfoliata and comparative analysis with four medicinal plants of Polygonaceae
    Huo, Ziting
    Xu, Wenbo
    Guo, Huijun
    Yang, Peng
    Zhang, Qianwen
    Lu, Xu
    Wang, Long
    GENOME, 2022, : 377 - 389
  • [4] The chloroplast genome of Fallopia aubertii (Polygonaceae) from Xining, China
    Lu, Yongchang
    Wang, Wancui
    Yu, Yingxiang
    Ma, Qian
    Wang, Huan
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (12): : 3458 - 3460
  • [5] The complete chloroplast genome of Agrimonia pilosa var. nepalensis (D. Don) Nakai
    Yang, Li
    Teng, Yun
    Gong, Shou-Fu
    Feng, Zhi-Min
    Zhang, Yan
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (03): : 938 - 940
  • [6] Characterization and phylogenetic analysis of the complete chloroplast genome of Amaranthus viridis (Amaranthaceae)
    Ding, Dian-Bin
    Pang, Qi-Hang
    Han, Xiao-Jun
    Fan, Shou-Jin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (09): : 2610 - 2612
  • [7] Characterization of the complete chloroplast genome of Juniperus cedrus (Cupressaceae)
    Guo, Qiqiang
    Bianba, Duoji
    Zheng, Weilie
    MITOCHONDRIAL DNA PART A, 2016, 27 (06) : 4355 - 4356
  • [8] Characterization of the complete chloroplast genome of Eutrema deltoideum (Brassicaceae)
    Zhang, Zilu
    Hao, Guoqian
    Kang, Zhenhui
    MITOCHONDRIAL DNA PART B-RESOURCES, 2024, 9 (04): : 512 - 516
  • [9] Characterization of the complete chloroplast genome of Salvia hispanica (Lamiaceae)
    Zhang, Xue-Jie
    Chen, Cui
    Wang, Rong
    Yao, Yan
    Liu, Ling-Xiao
    Zhang, Luo-Yan
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1748 - 1750
  • [10] Characterization of the complete chloroplast genome sequence of Cecropia pachystachya
    Wu, Zeng-Yuan
    Du, Xin-Yu
    Milne, Richard I.
    Liu, Jie
    Li, De-Zhu
    MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (02): : 735 - 737