Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes

被引:179
作者
Javanainen, Matti [1 ]
Hammaren, Henrik [1 ]
Monticelli, Luca [2 ]
Jeon, Jae-Hyung [1 ]
Miettinen, Markus S. [3 ]
Martinez-Seara, Hector [1 ]
Metzler, Ralf [1 ,4 ]
Vattulainen, Ilpo [1 ,5 ]
机构
[1] Tampere Univ Technol, Dept Phys, FI-33101 Tampere, Finland
[2] Univ Paris 07, INSERM, UMR S665, UFR Life Sci,DSIMB 75015, Paris, France
[3] Free Univ Berlin, Fachbereich Phys, D-14195 Berlin, Germany
[4] Univ Potsdam, Inst Phys & Astron, D-14476 Potsdam, Germany
[5] Univ So Denmark, MEMPHYS Ctr Biomembrane Phys, Odense, Denmark
基金
欧洲研究理事会; 芬兰科学院;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; COARSE-GRAINED MODEL; FREE-VOLUME MODEL; LATERAL DIFFUSION; ELECTROSTATIC INTERACTIONS; PULMONARY SURFACTANT; GLASS TRANSITION; DOMAIN FORMATION; PLASMA-MEMBRANE; CELL-MEMBRANE;
D O I
10.1039/c2fd20085f
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Lateral diffusion plays a crucial role in numerous processes that take place in cell membranes, yet it is quite poorly understood in native membranes characterized by, e.g., domain formation and large concentration of proteins. In this article, we use atomistic and coarse-grained simulations to consider how packing of membranes and crowding with proteins affect the lateral dynamics of lipids and membrane proteins. We find that both packing and protein crowding have a profound effect on lateral diffusion, slowing it down. Anomalous diffusion is observed to be an inherent property in both protein-free and protein-rich membranes, and the time scales of anomalous diffusion and the exponent associated with anomalous diffusion are found to strongly depend on packing and crowding. Crowding with proteins also has a striking effect on the decay rate of dynamical correlations associated with lateral single-particle motion, as the transition from anomalous to normal diffusion is found to take place at macroscopic time scales: while in protein-poor conditions normal diffusion is typically observed in hundreds of nanoseconds, in protein-rich conditions the onset of normal diffusion is tens of microseconds, and in the most crowded systems as large as milliseconds. The computational challenge which results from these time scales is not easy to deal with, not even in coarse-grained simulations. We also briefly discuss the physical limits of protein motion. Our results suggest that protein concentration is anything but constant in the plane of cell membranes. Instead, it is strongly dependent on proteins' preference for aggregation.
引用
收藏
页码:397 / 417
页数:21
相关论文
共 68 条
[1]   Non-Gaussian Fluctuations Resulting from Power-Law Trapping in a Lipid Bilayer [J].
Akimoto, Takuma ;
Yamamoto, Eiji ;
Yasuoka, Kenji ;
Hirano, Yoshinori ;
Yasui, Masato .
PHYSICAL REVIEW LETTERS, 2011, 107 (17)
[2]  
Almeida P.F. F., 1995, STRUCTURE DYNAMICS M, V1, P305, DOI [10.1016/S1383-8121(06)80023-0, 10.1016/S1383-8121, DOI 10.1016/S1383-8121]
[3]   LATERAL DIFFUSION IN THE LIQUID-PHASES OF DIMYRISTOYLPHOSPHATIDYLCHOLINE CHOLESTEROL LIPID BILAYERS - A FREE-VOLUME ANALYSIS [J].
ALMEIDA, PFF ;
VAZ, WLC ;
THOMPSON, TE .
BIOCHEMISTRY, 1992, 31 (29) :6739-6747
[4]   Concerted diffusion of lipids in raft-like membranes [J].
Apajalahti, Touko ;
Niemela, Perttu ;
Govindan, Praveen Nedumpully ;
Miettinen, Markus S. ;
Salonen, Emppu ;
Marrink, Siewert-Jan ;
Vattulainen, Ilpo .
FARADAY DISCUSSIONS, 2010, 144 :411-430
[5]   Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature [J].
Berger, O ;
Edholm, O ;
Jahnig, F .
BIOPHYSICAL JOURNAL, 1997, 72 (05) :2002-2013
[6]   Segregated Phases in Pulmonary Surfactant Membranes Do Not Show Coexistence of Lipid Populations with Differentiated Dynamic Properties [J].
Bernardino de la Serna, Jorge ;
Oradd, Greger ;
Bagatolli, Luis A. ;
Simonsen, Adam C. ;
Marsh, Derek ;
Lindblom, Goran ;
Perez-Gil, Jesus .
BIOPHYSICAL JOURNAL, 2009, 97 (05) :1381-1389
[7]   Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells [J].
Bronstein, I. ;
Israel, Y. ;
Kepten, E. ;
Mai, S. ;
Shav-Tal, Y. ;
Barkai, E. ;
Garini, Y. .
PHYSICAL REVIEW LETTERS, 2009, 103 (01)
[8]   Single particle tracking in systems showing anomalous diffusion: the role of weak ergodicity breaking [J].
Burov, Stas ;
Jeon, Jae-Hyung ;
Metzler, Ralf ;
Barkai, Eli .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2011, 13 (05) :1800-1812
[9]   Molecular Mechanism of Long-Range Diffusion in Phospholipid Membranes Studied by Quasielastic Neutron Scattering [J].
Busch, Sebastian ;
Smuda, Christoph ;
Carlos Pardo, Luis ;
Unruh, Tobias .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (10) :3232-3233
[10]   PARTICLE MESH EWALD - AN N.LOG(N) METHOD FOR EWALD SUMS IN LARGE SYSTEMS [J].
DARDEN, T ;
YORK, D ;
PEDERSEN, L .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (12) :10089-10092