High-Quality Genome Resource of Xanthomonas hyacinthi Generated via Long-Read Sequencing

被引：5
|
作者：
Cohen, Stephen P. [1 ]
Luna, Emily K. [2 ]
Lang, Jillian M. [2 ]
Ziegle, Janet [3 ]
Chang, Christine [3 ]
Leach, Jan E. [2 ]
Le-Saux, Marion Fischer [4 ,5 ]
Portier, Perrine [4 ,5 ]
Koebnik, Ralf [6 ]
Jacobs, Jonathan M. [1 ,7 ]
机构：
[1] Ohio State Univ, Dept Plant Pathol, Columbus, OH 43210 USA
[2] Colorado State Univ, Dept Bioagr Sci & Pest Management, Ft Collins, CO 80523 USA
[3] Pacific Biosci, Menlo Pk, CA 94025 USA
[4] Univ Angers, Inst Natl Rech Agron INRA, Agrocampus Ouest, IRHS,SFR 4207 QuaSav, F-49071 Beaucouze, France
[5] CIRM CFBP French Collect Plant Associated Bacteri, INRA ACO UA, IRHS, UMR 1345, 42 Rue Georges Morel, F-49070 Beaucouze, France
[6] Univ Montpellier, Ctr Cooperat Int Rech Agron Dev CIRAD, Inst Rech Dev IRD, IPME, F-34000 Montpellier, France
[7] Ohio State Univ, Infect Dis Inst, Columbus, OH 43210 USA
来源：
PLANT DISEASE | 2020年 / 104卷 / 04期
基金：
美国国家科学基金会; 美国农业部;
关键词：
hyacinth; SMRT sequencing; Xanthomonas hyacinthi; yellow disease; YELLOW DISEASE;
D O I：
10.1094/PDIS-11-19-2393-A
中图分类号：
Q94 [植物学];
学科分类号：
071001 ;
摘要：
The bacterial plant pathogen Xanthomonas hyacinthi is the causal agent of yellow disease of Hyacinthus and other ornamental plant genera. There is no available complete genome for X. hyacinthi, limiting basic research for this pathogen. Here, we release a high-quality complete genome sequence for the X. hyacinthi type strain, CFBP 1156. Single-molecule real-time (SMRT) sequencing with a mean coverage of 306x revealed two contigs of 4,918,645 and 44,381 bp in size. This was the first characterized plant-disease-causing species of Xanthomonas and this genome provides a resource to better understand the biology of yellow disease of hyacinth.
引用
收藏
页码：1011 / 1012
页数：2
相关论文
共 50 条
  • [1] Highly Contiguous Genome Resource of Colletotrichum fructicola Generated Using Long-Read Sequencing
    Liang, Xiaofei
    Cao, Mengyu
    Li, Sen
    Kong, Yuanyuan
    Rollins, Jeffrey A.
    Zhang, Rong
    Sun, Guangyu
    MOLECULAR PLANT-MICROBE INTERACTIONS, 2020, 33 (06) : 790 - 793
  • [2] High-Quality Genome Resource of Fusarium pseudograminearum Isolate Fp22-2 by Oxford Nanopore Long-Read Sequencing
    Tai, Jia
    Zhang, Xin
    Gao, Xinlong
    Liu, Huiquan
    Xu, Ming
    PLANT DISEASE, 2023, 107 (06) : 1925 - 1928
  • [3] Genome sequencing using long-read sequencing
    McEwen, Juan Guillermo
    Gomez, Oscar Mauricio
    REVISTA DE LA ACADEMIA COLOMBIANA DE CIENCIAS EXACTAS FISICAS Y NATURALES, 2023, 47 (183): : 439 - 444
  • [4] Complete or High-Quality Draft Genome Sequences of Six Xanthomonas hortorum Strains Sequenced with Short- and Long-Read Technologies
    Dia, Nay C.
    Rezzonico, Fabio
    Smits, Theo H. M.
    Pothier, Joel F.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (41):
  • [5] Opportunities and challenges for high-quality biodiversity tissue archives in the age of long-read sequencing
    Blom, Mozes P. K.
    MOLECULAR ECOLOGY, 2021, 30 (23) : 5935 - 5948
  • [6] Genome Announcement: Draft Genome Assembly of Heterodera humuli Generated Using Long-Read Sequencing
    Nunez-Rodriguez, Lester A.
    Wram, Catherine L.
    Hesse, Cedar
    Zasada, Inga A.
    JOURNAL OF NEMATOLOGY, 2024, 56 (01)
  • [7] A High-Quality Genome Assembly of Striped Catfish (Pangasianodon hypophthalmus) Based on Highly Accurate Long-Read HiFi Sequencing Data
    Dao Minh Hai
    Duong Thuy Yen
    Pham Thanh Liem
    Bui Minh Tam
    Do Thi Thanh Huong
    Bui Thi Bich Hang
    Dang Quang Hieu
    Garigliany, Mutien-Marie
    Coppieters, Wouter
    Kestemont, Patrick
    Nguyen Thanh Phuong
    Farnir, Frederic
    GENES, 2022, 13 (05)
  • [8] Exploration of whole genome amplification generated chimeric sequences in long-read sequencing data
    Lu, Na
    Qiao, Yi
    An, Pengfei
    Luo, Jiajian
    Bi, Changwei
    Li, Musheng
    Lu, Zuhong
    Tu, Jing
    BRIEFINGS IN BIOINFORMATICS, 2023, 24 (05)
  • [9] Improved Whole-Genome Sequence of Phytophthora capsici Generated by Long-Read Sequencing
    Shi, Jinxia
    Ye, Wenwu
    Ma, Dongfang
    Yin, Junliang
    Zhang, Zhichao
    Wang, Yuanchao
    Qiao, Yongli
    MOLECULAR PLANT-MICROBE INTERACTIONS, 2021, 34 (07) : 866 - 869
  • [10] Long-Read Annotation: Automated Eukaryotic Genome Annotation Based on Long-Read cDNA Sequencing
    Cook, David E.
    Valle-Inclan, Jose Espejo
    Pajoro, Alice
    Rovenich, Hanna
    Thomma, Bart P. H. J.
    Faino, Luigi
    PLANT PHYSIOLOGY, 2019, 179 (01) : 38 - 54
12345