Characterization of the complete chloroplast genome of Sparganium stoloniferum (Poales: Typhaceae) and phylogenetic analysis

被引：8
作者：
Su, Ting [1 ]
Yang, Jia-Xin [1 ]
Lin, Yao-Guang [1 ]
Kang, Nian [1 ]
Hu, Guo-Xiong [1 ,2 ]
机构：
[1] Guizhou Univ, Coll Life Sci, Guiyang 550025, Guizhou, Peoples R China
[2] Guizhou Univ, Res Ctr Biodivers & Nat Conservat, Guiyang 550025, Guizhou, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期
基金：
中国国家自然科学基金;
关键词：
Chloroplast genome; phylogenetic analysis; Sparganiaceae; Sparganium; Typhaceae; BIOGEOGRAPHY;
D O I：
10.1080/23802359.2019.1598798
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Sparganium stoloniferum is a perennial aquatic or marsh herb. In this study, we assembled and characterized the complete chloroplast (cp) genome of S. stoloniferum for the first time. The circular genome is 161,759 bp in length and exhibits a typical quadripartite structure of the large single-copy (LSC, 88,957 bp) and small single-copy (SSC, 19,030 bp) regions, separated by a pair of inverted repeats (IRs, 26,886 bp). It contains 113 unique genes, including 79 protein-coding genes, 30 tRNA, and four rRNA genes. The phylogenetic analysis within order Poales demonstrated that Sparganium is sister to Typha, supporting inclusion of Sparganium and Typha in the single Typhaceae.
引用
收藏
页码：1402 / 1403
页数：2
相关论文
共 14 条
  • [1] [Anonymous], 1970, BOT JB
  • [2] [Anonymous], P GAT COMP ENV WORKS
  • [3] Chen YD, 1992, FLORA REIPUBLICAE PO, V8, P25
  • [4] COOK CDK, 1986, BOT HELV, V96, P213
  • [5] Doyle JJ., 1987, Phytochem Bull, V19, P11, DOI DOI 10.1016/0031-9422(80)85004-7
  • [6] Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots
    Givnish, Thomas J.
    Zuluaga, Alejandro
    Spalink, Daniel
    Gomez, Marybel Soto
    Lam, Vivienne K. Y.
    Saarela, Jeffrey M.
    Sass, Chodon
    Iles, William J. D.
    Lima de Sousa, Danilo Jose
    Leebens-Mack, James
    Pires, J. Chris
    Zomlefer, Wendy B.
    Gandolfo, Maria A.
    Davis, Jerrold I.
    Stevenson, Dennis W.
    dePamphilis, Claude
    Specht, Chelsea D.
    Graham, Sean W.
    Barrett, Craig F.
    Ane, Cecile
    [J]. AMERICAN JOURNAL OF BOTANY, 2018, 105 (11) : 1888 - 1910
  • [7] PHYLOGENY, ADAPTIVE RADIATION, AND HISTORICAL BIOGEOGRAPHY IN BROMELIACEAE: INSIGHTS FROM AN EIGHT-LOCUS PLASTID PHYLOGENY
    Givnish, Thomas J.
    Barfuss, Michael H. J.
    Van Ee, Benjamin
    Riina, Ricarda
    Schulte, Katharina
    Horres, Ralf
    Gonsiska, Philip A.
    Jabaily, Rachel S.
    Crayn, Darren M.
    Smith, J. Andrew C.
    Winter, Klaus
    Brown, Gregory K.
    Evans, Timothy M.
    Holst, Bruce K.
    Luther, Harry
    Till, Walter
    Zizka, Georg
    Berry, Paul E.
    Sytsma, Kenneth J.
    [J]. AMERICAN JOURNAL OF BOTANY, 2011, 98 (05) : 872 - 895
  • [8] Jin J., 2018, bioRxiv
  • [9] Kubitzki K., 1998, FLOWERING PLANTS MON, P457
  • [10] OrganellarGenomeDRAW-a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
    Lohse, Marc
    Drechsel, Oliver
    Kahlau, Sabine
    Bock, Ralph
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (W1) : W575 - W581
12