共 383 条
mRNA Editing, Processing and Quality Control inCaenorhabditis elegans
被引:24
作者:

Arribere, Joshua A.
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h-index: 0
机构:
Univ Calif Santa Cruz, Dept MCD Biol, Santa Cruz, CA 95064 USA Univ Calif Santa Cruz, Dept MCD Biol, Santa Cruz, CA 95064 USA

Kuroyanagi, Hidehito
论文数: 0 引用数: 0
h-index: 0
机构:
Tokyo Med & Dent Univ, Med Res Inst, Gene Express Lab, Tokyo 1138510, Japan Univ Calif Santa Cruz, Dept MCD Biol, Santa Cruz, CA 95064 USA

Hundley, Heather A.
论文数: 0 引用数: 0
h-index: 0
机构:
Indiana Univ Sch Med, Med Sci Program, Bloomington, IN 47405 USA Univ Calif Santa Cruz, Dept MCD Biol, Santa Cruz, CA 95064 USA
机构:
[1] Univ Calif Santa Cruz, Dept MCD Biol, Santa Cruz, CA 95064 USA
[2] Tokyo Med & Dent Univ, Med Res Inst, Gene Express Lab, Tokyo 1138510, Japan
[3] Indiana Univ Sch Med, Med Sci Program, Bloomington, IN 47405 USA
来源:
基金:
日本科学技术振兴机构;
美国国家科学基金会;
日本学术振兴会;
美国国家卫生研究院;
关键词:
Caenorhabditis elegans;
splicing;
RNA editing;
RNA modification;
polyadenylation;
quality control;
WormBook;
NONSENSE-MEDIATED DECAY;
DOUBLE-STRANDED-RNA;
CRYO-EM STRUCTURE;
PROMOTES TRANSCRIPTION TERMINATION;
SPINAL MUSCULAR-ATROPHY;
GENOME-WIDE ANALYSIS;
U2AF LARGE SUBUNIT;
CAENORHABDITIS-ELEGANS;
C;
ELEGANS;
BINDING-PROTEIN;
D O I:
10.1534/genetics.119.301807
中图分类号:
Q3 [遗传学];
学科分类号:
071007 ;
090102 ;
摘要:
While DNA serves as the blueprint of life, the distinct functions of each cell are determined by the dynamic expression of genes from the static genome. The amount and specific sequences of RNAs expressed in a given cell involves a number of regulated processes including RNA synthesis (transcription), processing, splicing, modification, polyadenylation, stability, translation, and degradation. As errors during mRNA production can create gene products that are deleterious to the organism, quality control mechanisms exist to survey and remove errors in mRNA expression and processing. Here, we will provide an overview of mRNA processing and quality control mechanisms that occur inCaenorhabditis elegans, with a focus on those that occur on protein-coding genes after transcription initiation. In addition, we will describe the genetic and technical approaches that have allowed studies inC. elegansto reveal important mechanistic insight into these processes.
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收藏
页码:531 / 568
页数:38
相关论文
共 383 条
[1]
A global analysis of C. elegans trans-splicing
[J].
Allen, Mary Ann
;
Hillier, LaDeana W.
;
Waterston, Robert H.
;
Blumenthal, Thomas
.
GENOME RESEARCH,
2011, 21 (02)
:255-264

Allen, Mary Ann
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Colorado, Dept Mol Cellular & Dev Biol, Boulder, CO 80309 USA Univ Colorado, Dept Mol Cellular & Dev Biol, Boulder, CO 80309 USA

Hillier, LaDeana W.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Sch Med, Dept Genome Sci, Seattle, WA 98195 USA Univ Colorado, Dept Mol Cellular & Dev Biol, Boulder, CO 80309 USA

Waterston, Robert H.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Sch Med, Dept Genome Sci, Seattle, WA 98195 USA Univ Colorado, Dept Mol Cellular & Dev Biol, Boulder, CO 80309 USA

Blumenthal, Thomas
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Colorado, Dept Mol Cellular & Dev Biol, Boulder, CO 80309 USA Univ Colorado, Dept Mol Cellular & Dev Biol, Boulder, CO 80309 USA
[2]
Backbone-independent nucleic acid binding by splicing factor SUP-12 reveals key aspects of molecular recognition
[J].
Amrane, Samir
;
Rebora, Karine
;
Zniber, Ilyass
;
Dupuy, Denis
;
Mackereth, Cameron D.
.
NATURE COMMUNICATIONS,
2014, 5

Amrane, Samir
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Bordeaux, IECB, F-33607 Pessac, France
INSERM, ARNA Lab, U869, F-33076 Bordeaux, France Univ Bordeaux, IECB, F-33607 Pessac, France

Rebora, Karine
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Bordeaux, IECB, F-33607 Pessac, France
INSERM, ARNA Lab, U869, F-33076 Bordeaux, France Univ Bordeaux, IECB, F-33607 Pessac, France

Zniber, Ilyass
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Bordeaux, IECB, F-33607 Pessac, France
INSERM, ARNA Lab, U869, F-33076 Bordeaux, France Univ Bordeaux, IECB, F-33607 Pessac, France

论文数: 引用数:
h-index:
机构:

Mackereth, Cameron D.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Bordeaux, IECB, F-33607 Pessac, France
INSERM, ARNA Lab, U869, F-33076 Bordeaux, France Univ Bordeaux, IECB, F-33607 Pessac, France
[3]
A faux 3′-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay
[J].
Amrani, N
;
Ganesan, R
;
Kervestin, S
;
Mangus, DA
;
Ghosh, S
;
Jacobson, A
.
NATURE,
2004, 432 (7013)
:112-118

Amrani, N
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Massachusetts, Sch Med, Dept Mol Genet & Microbiol, Worcester, MA 01655 USA Univ Massachusetts, Sch Med, Dept Mol Genet & Microbiol, Worcester, MA 01655 USA

Ganesan, R
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Massachusetts, Sch Med, Dept Mol Genet & Microbiol, Worcester, MA 01655 USA Univ Massachusetts, Sch Med, Dept Mol Genet & Microbiol, Worcester, MA 01655 USA

Kervestin, S
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Massachusetts, Sch Med, Dept Mol Genet & Microbiol, Worcester, MA 01655 USA Univ Massachusetts, Sch Med, Dept Mol Genet & Microbiol, Worcester, MA 01655 USA

Mangus, DA
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Massachusetts, Sch Med, Dept Mol Genet & Microbiol, Worcester, MA 01655 USA Univ Massachusetts, Sch Med, Dept Mol Genet & Microbiol, Worcester, MA 01655 USA

Ghosh, S
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Massachusetts, Sch Med, Dept Mol Genet & Microbiol, Worcester, MA 01655 USA Univ Massachusetts, Sch Med, Dept Mol Genet & Microbiol, Worcester, MA 01655 USA

论文数: 引用数:
h-index:
机构:
[4]
SMG-5, required for C-elegans nonsense-mediated mRNA decay, associates with SMG-2 and protein phosphatase 2A
[J].
Anders, KR
;
Grimson, A
;
Anderson, P
.
EMBO JOURNAL,
2003, 22 (03)
:641-650

Anders, KR
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Genet, Madison, WI 53706 USA Univ Wisconsin, Dept Genet, Madison, WI 53706 USA

Grimson, A
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Genet, Madison, WI 53706 USA Univ Wisconsin, Dept Genet, Madison, WI 53706 USA

Anderson, P
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Genet, Madison, WI 53706 USA Univ Wisconsin, Dept Genet, Madison, WI 53706 USA
[5]
The third and fourth tropomyosin isoforms of Caenorhabditis elegans are expressed in the pharynx and intestines and are essential for development and morphology
[J].
Anyanful, A
;
Sakube, Y
;
Takuwa, K
;
Kagawa, H
.
JOURNAL OF MOLECULAR BIOLOGY,
2001, 313 (03)
:525-537

Anyanful, A
论文数: 0 引用数: 0
h-index: 0
机构: Okayama Univ, Grad Sch Nat Sci & Technol, Okayama 7008530, Japan

Sakube, Y
论文数: 0 引用数: 0
h-index: 0
机构: Okayama Univ, Grad Sch Nat Sci & Technol, Okayama 7008530, Japan

Takuwa, K
论文数: 0 引用数: 0
h-index: 0
机构: Okayama Univ, Grad Sch Nat Sci & Technol, Okayama 7008530, Japan

Kagawa, H
论文数: 0 引用数: 0
h-index: 0
机构: Okayama Univ, Grad Sch Nat Sci & Technol, Okayama 7008530, Japan
[6]
Nonsense mRNA suppression via nonstop decay
[J].
Arribere, Joshua A.
;
Fire, Andrew Z.
.
ELIFE,
2018, 7

Arribere, Joshua A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Santa Cruz, Dept Mol Cell & Dev Biol, Santa Cruz, CA 95064 USA Univ Calif Santa Cruz, Dept Mol Cell & Dev Biol, Santa Cruz, CA 95064 USA

Fire, Andrew Z.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Pathol, Sch Med, Stanford, CA 94305 USA
Stanford Univ, Dept Genet, Sch Med, Stanford, CA 94305 USA Univ Calif Santa Cruz, Dept Mol Cell & Dev Biol, Santa Cruz, CA 95064 USA
[7]
Translation readthrough mitigation
[J].
Arribere, Joshua A.
;
Cenik, Elif S.
;
Jain, Nimit
;
Hess, Gaelen T.
;
Lee, Cameron H.
;
Bassik, Michael C.
;
Fire, Andrew Z.
.
NATURE,
2016, 534 (7609)
:719-+

Arribere, Joshua A.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Pathol, Sch Med, Stanford, CA 94305 USA Stanford Univ, Dept Pathol, Sch Med, Stanford, CA 94305 USA

Cenik, Elif S.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Pathol, Sch Med, Stanford, CA 94305 USA Stanford Univ, Dept Pathol, Sch Med, Stanford, CA 94305 USA

Jain, Nimit
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA Stanford Univ, Dept Pathol, Sch Med, Stanford, CA 94305 USA

Hess, Gaelen T.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Genet, Sch Med, Stanford, CA 94305 USA Stanford Univ, Dept Pathol, Sch Med, Stanford, CA 94305 USA

Lee, Cameron H.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Genet, Sch Med, Stanford, CA 94305 USA Stanford Univ, Dept Pathol, Sch Med, Stanford, CA 94305 USA

论文数: 引用数:
h-index:
机构:

Fire, Andrew Z.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Pathol, Sch Med, Stanford, CA 94305 USA
Stanford Univ, Dept Genet, Sch Med, Stanford, CA 94305 USA Stanford Univ, Dept Pathol, Sch Med, Stanford, CA 94305 USA
[8]
CSR-1 RNAi pathway positively regulates histone expression in C. elegans
[J].
Avgousti, Daphne C.
;
Palani, Santhosh
;
Sherman, Yekaterina
;
Grishok, Alla
.
EMBO JOURNAL,
2012, 31 (19)
:3821-3832

Avgousti, Daphne C.
论文数: 0 引用数: 0
h-index: 0
机构:
Columbia Univ, Med Ctr, Dept Biochem & Mol Biophys, New York, NY 10032 USA Columbia Univ, Med Ctr, Dept Biochem & Mol Biophys, New York, NY 10032 USA

Palani, Santhosh
论文数: 0 引用数: 0
h-index: 0
机构:
Columbia Univ, Med Ctr, Dept Biochem & Mol Biophys, New York, NY 10032 USA Columbia Univ, Med Ctr, Dept Biochem & Mol Biophys, New York, NY 10032 USA

Sherman, Yekaterina
论文数: 0 引用数: 0
h-index: 0
机构:
Columbia Univ, Med Ctr, Dept Biochem & Mol Biophys, New York, NY 10032 USA Columbia Univ, Med Ctr, Dept Biochem & Mol Biophys, New York, NY 10032 USA

Grishok, Alla
论文数: 0 引用数: 0
h-index: 0
机构:
Columbia Univ, Med Ctr, Dept Biochem & Mol Biophys, New York, NY 10032 USA Columbia Univ, Med Ctr, Dept Biochem & Mol Biophys, New York, NY 10032 USA
[9]
Structures of the fully assembled Saccharomyces cerevisiae spliceosome before activation
[J].
Bai, Rui
;
Wan, Ruixue
;
Yan, Chuangye
;
Lei, Jianlin
;
Shi, Yigong
.
SCIENCE,
2018, 360 (6396)
:1423-1428

Bai, Rui
论文数: 0 引用数: 0
h-index: 0
机构:
Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Life Sci, Beijing 100084, Peoples R China
Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Med, Beijing 100084, Peoples R China Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Life Sci, Beijing 100084, Peoples R China

Wan, Ruixue
论文数: 0 引用数: 0
h-index: 0
机构:
Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Life Sci, Beijing 100084, Peoples R China
Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Med, Beijing 100084, Peoples R China Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Life Sci, Beijing 100084, Peoples R China

Yan, Chuangye
论文数: 0 引用数: 0
h-index: 0
机构:
Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Life Sci, Beijing 100084, Peoples R China
Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Med, Beijing 100084, Peoples R China Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Life Sci, Beijing 100084, Peoples R China

Lei, Jianlin
论文数: 0 引用数: 0
h-index: 0
机构:
Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Life Sci, Beijing 100084, Peoples R China
Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Med, Beijing 100084, Peoples R China
Tsinghua Univ, Sch Life Sci, Technol Ctr Prot Sci, Minist Educ,Key Lab Prot Sci, Beijing 100084, Peoples R China Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Life Sci, Beijing 100084, Peoples R China

Shi, Yigong
论文数: 0 引用数: 0
h-index: 0
机构:
Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Life Sci, Beijing 100084, Peoples R China
Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Med, Beijing 100084, Peoples R China
Westlake Univ, Inst Biol, Westlake Inst Adv Study, 18 Shilongshan Rd, Hangzhou 310064, Zhejiang, Peoples R China Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Tsinghua Peking Joint Ctr Life Sci, Sch Life Sci, Beijing 100084, Peoples R China
[10]
Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae
[J].
Bai, Rui
;
Yan, Chuangye
;
Wan, Ruixue
;
Lei, Jianlin
;
Shi, Yigong
.
CELL,
2017, 171 (07)
:1589-+

Bai, Rui
论文数: 0 引用数: 0
h-index: 0
机构:
Tsinghua Univ, Sch Life Sci, Tsinghua Peking Joint Ctr Life Sci, Beijing Adv Innovat Ctr Struct Biol, Beijing 100084, Peoples R China
Tsinghua Univ, Sch Med, Beijing 100084, Peoples R China Tsinghua Univ, Sch Life Sci, Tsinghua Peking Joint Ctr Life Sci, Beijing Adv Innovat Ctr Struct Biol, Beijing 100084, Peoples R China

Yan, Chuangye
论文数: 0 引用数: 0
h-index: 0
机构:
Tsinghua Univ, Sch Life Sci, Tsinghua Peking Joint Ctr Life Sci, Beijing Adv Innovat Ctr Struct Biol, Beijing 100084, Peoples R China
Tsinghua Univ, Sch Med, Beijing 100084, Peoples R China Tsinghua Univ, Sch Life Sci, Tsinghua Peking Joint Ctr Life Sci, Beijing Adv Innovat Ctr Struct Biol, Beijing 100084, Peoples R China

Wan, Ruixue
论文数: 0 引用数: 0
h-index: 0
机构:
Tsinghua Univ, Sch Life Sci, Tsinghua Peking Joint Ctr Life Sci, Beijing Adv Innovat Ctr Struct Biol, Beijing 100084, Peoples R China
Tsinghua Univ, Sch Med, Beijing 100084, Peoples R China Tsinghua Univ, Sch Life Sci, Tsinghua Peking Joint Ctr Life Sci, Beijing Adv Innovat Ctr Struct Biol, Beijing 100084, Peoples R China

Lei, Jianlin
论文数: 0 引用数: 0
h-index: 0
机构:
Tsinghua Univ, Sch Life Sci, Tsinghua Peking Joint Ctr Life Sci, Beijing Adv Innovat Ctr Struct Biol, Beijing 100084, Peoples R China
Tsinghua Univ, Sch Med, Beijing 100084, Peoples R China
Tsinghua Univ, Sch Life Sci, Technol Ctr Prot Sci, Minist Educ,Key Lab Prot Sci, Beijing 100084, Peoples R China Tsinghua Univ, Sch Life Sci, Tsinghua Peking Joint Ctr Life Sci, Beijing Adv Innovat Ctr Struct Biol, Beijing 100084, Peoples R China

Shi, Yigong
论文数: 0 引用数: 0
h-index: 0
机构:
Tsinghua Univ, Sch Life Sci, Tsinghua Peking Joint Ctr Life Sci, Beijing Adv Innovat Ctr Struct Biol, Beijing 100084, Peoples R China
Tsinghua Univ, Sch Med, Beijing 100084, Peoples R China
Westlake Univ, Westlake Inst Adv Study, Inst Biol, Shilongshan Rd 18, Hangzhou 310064, Zhejiang, Peoples R China Tsinghua Univ, Sch Life Sci, Tsinghua Peking Joint Ctr Life Sci, Beijing Adv Innovat Ctr Struct Biol, Beijing 100084, Peoples R China