Newly Emerged Porcine Deltacoronavirus Associated With Diarrhoea in Swine in China: Identification, Prevalence and Full-Length Genome Sequence Analysis

被引：209

作者：

Song, D. ^{[1
]}

Zhou, X. ^{[1
]}

Peng, Q. ^{[1
]}

Chen, Y. ^{[1
]}

Zhang, F. ^{[1
]}

Huang, T. ^{[1
]}

Zhang, T. ^{[1
]}

Li, A. ^{[1
]}

Huang, D. ^{[1
]}

Wu, Q. ^{[1
]}

He, H. ^{[1
]}

Tang, Y. ^{[1
]}

机构：

[1] Jiangxi Agr Univ, Nanchang, Jiangxi, Peoples R China

来源：

TRANSBOUNDARY AND EMERGING DISEASES | 2015年 / 62卷 / 06期

基金：

中国国家自然科学基金;

关键词：

porcine deltacoronavirus (PDCoV); diarrhoea; nested RT-PCR; prevalence; complete genome; phylogenetic analysis; CORONAVIRUS; PIGS;

D O I：

10.1111/tbed.12399

中图分类号：

R51 [传染病];

学科分类号：

100401 ;

摘要：

To identify and characterize aetiologic agent(s) associated with an outbreak of a severe diarrhoea in piglets in Jiangxi, China, in March 2015, a nested reverse transcription-polymerase chain reaction (RT-PCR) for the detection of porcine deltacoronavirus (PDCoV) was developed. A survey based on the nested RT-PCR established indicated that the monoinfection of PDCoV (33.71%) and coinfection of PDCoV (19.66%) with porcine epidemic diarrhoea virus (PEDV) were common in diarrhoeal pigs in Jiangxi, China. A high prevalence of PDCoV (58.33%) in diarrhoeal samples which were PEDV negative was observed. The complete genome sequence of a representative PDCoV strain, PDCoV/CHJXNI2/2015, was determined. Phylogenetic analysis of complete genome and S protein sequences of PDCoV/CHJXNI2/2015 demonstrated that it was most closely related to Hong Kong and US PDCoVs. To our knowledge, this is the first report on the identification, prevalence, complete genome sequencing and molecular characterizations of PDCoV in diarrhoeal samples in pigs in China.

引用

页码：575 / 580

页数：6

共 19 条

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