Identification of Candidate Biomarkers for Salt Sensitivity of Blood Pressure by Integrated Bioinformatics Analysis

被引:10
作者
Chen, Chen [1 ,2 ,3 ]
Liu, Guan-Zhi [4 ]
Liao, Yue-Yuan [1 ,2 ,3 ]
Chu, Chao [1 ]
Zheng, Wen-Ling [1 ]
Wang, Yang [1 ]
Hu, Jia-Wen [1 ]
Ma, Qiong [1 ,2 ,3 ]
Wang, Ke-Ke [1 ,2 ,3 ]
Yan, Yu [1 ,2 ,3 ]
Yuan, Yue [1 ,2 ,3 ]
Mu, Jian-Jun [1 ,2 ,3 ]
机构
[1] Xi An Jiao Tong Univ, Affiliated Hosp 1, Dept Cardiol, Med Sch, Xian, Peoples R China
[2] Key Lab Mol Cardiol Shaanxi Prov, Xian, Peoples R China
[3] Xi An Jiao Tong Univ, Key Lab Environm & Genes Related Dis, Minist Educ, Xian, Peoples R China
[4] Xi An Jiao Tong Univ, Bone & Joint Surg Ctr, Affiliated Hosp 2, Xian, Peoples R China
基金
中国国家自然科学基金;
关键词
salt sensitivity of blood pressure; biomarker; circRNA; hub gene; weighted gene coexpression network analysis; bioinformatics; E3 UBIQUITIN LIGASES; INSULIN-RESISTANCE; NONCODING RNA; CIRCULAR RNAS; SODIUM; HERITABILITY;
D O I
10.3389/fgene.2020.00988
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In the current study, we aimed to identify potential biomarkers for salt sensitivity of blood pressure (SSBP), which may provide a novel insight into the pathogenic mechanisms of salt-sensitive hypertension. Firstly, we conducted weighted gene coexpression network analysis (WGCNA) and selected a gene module and 60 hub genes significantly correlated to SSBP. Then, GO function and KEGG signaling pathway enrichment analysis and protein-protein interaction (PPI) network analysis were performed. Furthermore, we identified a five-gene signature with high connectivity degree in the PPI network and high AUC of ROC curves, which may have high diagnosis value for SSBP. Moreover, through combining two gene screening methods, we identified 23 differentially expressed circRNAs and selected the top 5% circRNAs (1 circRNA) with the highest connectivity degree in the coexpression network as hub circRNA highly associated with SSBP. Finally, we carried out RT-qPCR to validate the expression of five hub genes, and our results showed that the expression of HECTD1 (P= 0.017), SRSF5 (P= 0.003), SRSF1 (P= 0.006), HERC2 (P= 0.004), and TNPO1 (P= 0.002) was significantly upregulated in the renal tissue in salt-sensitive rats compared to salt-resistant rats, indicating that these five hub genes can serve as potential biomarkers for SSBP.
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页数:10
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