Use of whole-genome sequencing for outbreak investigations

被引:13
作者
Diep, Binh An [1 ,2 ]
机构
[1] Univ Calif San Francisco, San Francisco Gen Hosp, Div Infect Dis, Dept Med, San Francisco, CA 94143 USA
[2] Univ Calif Berkeley, Sch Publ Hlth, Div Infect Dis & Vaccinol, Berkeley, CA 94720 USA
关键词
RESISTANT STAPHYLOCOCCUS-AUREUS; PANTON-VALENTINE LEUKOCIDIN; RISK-FACTORS; COLONIZATION; INFECTION; MRSA;
D O I
10.1016/S1473-3099(12)70276-1
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
引用
收藏
页码:99 / 101
页数:3
相关论文
共 13 条
[1]   Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus [J].
Diep, BA ;
Gill, SR ;
Chang, RF ;
Phan, TH ;
Chen, JH ;
Davidson, MG ;
Lin, F ;
Lin, J ;
Carleton, HA ;
Mongodin, EF ;
Sensabaugh, GF ;
Perdreau-Remington, F .
LANCET, 2006, 367 (9512) :731-739
[2]   Polymorphonuclear leukocytes mediate Staphylococcus aureus Panton-Valentine leukocidin-induced lung inflammation and injury [J].
Diep, Binh An ;
Chan, Liana ;
Tattevin, Pierre ;
Kajikawa, Osamu ;
Martin, Thomas R. ;
Basuino, Li ;
Mai, Thuy T. ;
Marbach, Helene ;
Braughton, Kevin R. ;
Whitney, Adeline R. ;
Gardner, Donald J. ;
Fan, Xuemo ;
Tseng, Ching W. ;
Liu, George Y. ;
Badiou, Cedric ;
Etienne, Jerome ;
Lina, Gerard ;
Matthay, Michael A. ;
DeLeo, Frank R. ;
Chambers, Henry F. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (12) :5587-5592
[3]   An outbreak in an intensive care unit of a strain of methicillin-resistant Staphylococcus aureus sequence type 239 associated with an increased rate of vascular access device-related bacteremia [J].
Edgeworth, Jonathan D. ;
Yadegarfar, Ghasem ;
Pathak, Smriti ;
Batra, Rahul ;
Cockfield, Joshua D. ;
Wyncoll, Duncan ;
Beale, Richard ;
Lindsay, Jodi A. .
CLINICAL INFECTIOUS DISEASES, 2007, 44 (04) :493-501
[4]   Association between Staphylococcus aureus strains carrying gene for Panton-Valentine leukocidin and highly lethal necrotising pneumonia in young immunocompetent patients [J].
Gillet, Y ;
Issartel, B ;
Vanhems, P ;
Fournet, JC ;
Lina, G ;
Bes, M ;
Vandenesch, F ;
Piémont, Y ;
Brousse, N ;
Floret, D ;
Etienne, J .
LANCET, 2002, 359 (9308) :753-759
[5]  
Harris S.R., 2012, The Lancet infectious diseases
[6]   Evolution of MRSA During Hospital Transmission and Intercontinental Spread [J].
Harris, Simon R. ;
Feil, Edward J. ;
Holden, Matthew T. G. ;
Quail, Michael A. ;
Nickerson, Emma K. ;
Chantratita, Narisara ;
Gardete, Susana ;
Tavares, Ana ;
Day, Nick ;
Lindsay, Jodi A. ;
Edgeworth, Jonathan D. ;
de Lencastre, Herminia ;
Parkhill, Julian ;
Peacock, Sharon J. ;
Bentley, Stephen D. .
SCIENCE, 2010, 327 (5964) :469-474
[7]   Risk factors for colonization with methicillin-resistant Staphylococcus aureus (MRSA) in patients admitted to an urban hospital:: Emergence of community-associated MRSA nasal carriage [J].
Hidron, AI ;
Kourbatova, EV ;
Halvosa, JS ;
Terrell, BJ ;
McDougal, LK ;
Tenover, FC ;
Blumberg, HM ;
King, MD .
CLINICAL INFECTIOUS DISEASES, 2005, 41 (02) :159-166
[8]   Genome Sequence of a Recently Emerged, Highly Transmissible, Multi-Antibiotic- and Antiseptic-Resistant Variant of Methicillin-Resistant Staphylococcus aureus, Sequence Type 239 (TW) [J].
Holden, Matthew T. G. ;
Lindsay, Jodi A. ;
Corton, Craig ;
Quail, Michael A. ;
Cockfield, Joshua D. ;
Pathak, Smriti ;
Batra, Rahul ;
Parkhill, Julian ;
Bentley, Stephen D. ;
Edgeworth, Jonathan D. .
JOURNAL OF BACTERIOLOGY, 2010, 192 (03) :888-892
[9]   Epidemic community-associated methicillin-resistant Staphylococcus aureus:: Recent clonal expansion and diversification [J].
Kennedy, Adam D. ;
Otto, Michael ;
Braughton, Kevin R. ;
Whitney, Adeline R. ;
Chen, Liang ;
Mathema, Barun ;
Mediavilla, Jose R. ;
Byrne, Kelly A. ;
Parkins, Larye D. ;
Tenover, Fred C. ;
Kreiswirth, Barry N. ;
Musser, James M. ;
DeLeo, Frank R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (04) :1327-1332
[10]   MRSA epidemic linked to a quickly spreading colonization and virulence determinant [J].
Li, Min ;
Du, Xin ;
Villaruz, Amer E. ;
Diep, Binh An ;
Wang, Decheng ;
Song, Yan ;
Tian, Yueru ;
Hu, Jinhui ;
Yu, Fangyou ;
Lu, Yuan ;
Otto, Michael .
NATURE MEDICINE, 2012, 18 (05) :816-U217