Parallelization of the polarizable embedding scheme for higher-order response functions

被引:2
作者
Steindal, Arnfinn Hykkerud [1 ]
Olsen, Jogvan Magnus Haugaard [2 ]
Frediani, Luca [1 ]
Kongsted, Jacob [2 ]
Ruud, Kenneth [1 ]
机构
[1] Univ Tromso, Ctr Theoret & Computat Chem, Dept Chem, N-9037 Tromso, Norway
[2] Univ So Denmark, Dept Phys Chem & Pharm, DK-5230 Odense M, Denmark
基金
欧洲研究理事会;
关键词
polarizable embedding; parallel calculations; excitation energies; response theory; FRAGMENT POTENTIAL METHOD; DIPOLE INTERACTION-MODEL; MOLECULAR-PROPERTIES; ENZYME-REACTIONS; IMPLEMENTATION; OPTIMIZATION; COMPUTATION; SIMULATION; COMPUTERS; ENERGY;
D O I
10.1080/00268976.2012.721016
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present a parallel implementation of the Polarizable Embedding (PE) method, an advanced quantum mechanics/molecular mechanics (QM/MM) approach, for Hartree-Fock (PE-HF) and density functional theory (PE-DFT). The parallelization includes calculations of energies and linear, quadratic, and cubic response functions. The couplings to the QM system due to the polarizable embedding potential have been implemented using a master/slave approach. The implementation shows good scaling behaviour, demonstrated through calculations on a small (a water molecule in a bulk of water molecules) and a larger system (Green Fluorescent Protein (GFP)).
引用
收藏
页码:2579 / 2586
页数:8
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