An efficient protocol for total DNA extraction from the members of order Zingiberales- suitable for diverse PCR based downstream applications

被引:39
作者
Devi, Khumallambam Devala [1 ]
Punyarani, Kshetrimayum [1 ]
Singh, Nandeibam Samarjit [1 ]
Devi, Huidrom Sunitibala [1 ]
机构
[1] Inst Bioresources & Sustainable Dev, Med Plants & Hort Resources Div, Takyelpat Inst Area, Imphal 795001, Manipur, India
关键词
CTAB; DNA extraction; DNA barcoding gene; ISSR; RAPD; Virus detection; Zingiberales; QUALITY GENOMIC DNA; HERBARIUM SPECIMENS; VIRUS; DISEASE; PLANTS; L;
D O I
10.1186/2193-1801-2-669
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Different protocols are usually used for extracting total deoxyribonucleic acid (DNA) from different plant species of same order and DNA of the associated viruses. Here, we describe a rapid, efficient and universal protocol for isolating total DNA from the members of Zingiberales which harbor a high amount of polysaccharides and secondary metabolites. DNA isolated with this protocol was successfully used for PCR based downstream applications viz. random amplified polymorphic DNA (RAPD), Inter-simple sequence repeats (ISSR), DNA barcoding gene (Internal transcribed spacer and trnl-f) amplification and detection of the viruses.
引用
收藏
页码:1 / 9
页数:9
相关论文
共 30 条
[1]   A protocol for high-quality genomic DNA extraction from legumes [J].
Agbagwa, I. O. ;
Datta, S. ;
Patil, P. G. ;
Singh, P. ;
Nadarajan, N. .
GENETICS AND MOLECULAR RESEARCH, 2012, 11 (04) :4632-4639
[2]   Association of a badnavirus with citrus mosaic disease in India [J].
Ahlawat, YS ;
Pant, RP ;
Lockhart, BEL ;
Srivastava, M ;
Chakraborty, NK ;
Varma, A .
PLANT DISEASE, 1996, 80 (05) :590-592
[3]   High-quality plant DNA extraction for PCR: an easy approach [J].
Ahmed, I. ;
Islam, M. ;
Arshad, W. ;
Mannan, A. ;
Ahmad, W. ;
Mirza, B. .
JOURNAL OF APPLIED GENETICS, 2009, 50 (02) :105-107
[4]   Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques [J].
Aljanabi, SM ;
Martinez, I .
NUCLEIC ACIDS RESEARCH, 1997, 25 (22) :4692-4693
[5]  
Arbi G, 2009, AFR J BIOTECHNOL, V8, P4020
[6]  
Biswas K, 2011, CURR SCI INDIA, V100, P1622
[7]   Copper (II) acetate improves the quality of pear (Pyrus) DNA during extraction [J].
Bokszczanin K. ;
Przybyla A.A. .
Plant Molecular Biology Reporter, 2006, 24 (2) :249a-249d
[8]   THE GENOME ORGANIZATION OF BANANA BUNCHY TOP VIRUS - ANALYSIS OF 6 SSDNA COMPONENTS [J].
BURNS, TM ;
HARDING, RM ;
DALE, JL .
JOURNAL OF GENERAL VIROLOGY, 1995, 76 :1471-1482
[9]  
Chakraborti D, 2006, AFR J BIOTECHNOL, V5, P585
[10]  
Doyle JJ., 1987, FOCUS, V19, P11, DOI DOI 10.2307/2419362