recluster: an unbiased clustering procedure for beta-diversity turnover

被引：72

作者：

Dapporto, Leonardo ^{[1
]}

Ramazzotti, Matteo ^{[3
]}

Fattorini, Simone ^{[4
,5
,6
]}

Talavera, Gerard ^{[7
]}

Vila, Roger ^{[7
]}

Dennis, Roger L. H. ^{[1
,2
]}

机构：

[1] Oxford Brookes Univ, Dept Biol & Med Sci, Oxford OX3 0BP, England

[2] Staffordshire Univ, Inst Environm Sustainabil & Regenerat, Stoke On Trent ST4 2DE, Staffs, England

[3] Dipto Sci Biomed Sperimentali & Clin, IT-50134 Florence, Italy

[4] Univ Azores, Azorean Biodivers Grp CITA A, Terceira, Azores, Portugal

[5] Univ Azores, PEERS, Terceira, Azores, Portugal

[6] Univ Milano Bicocca, Dept Biotechnol & Biosci, Water Ecol Team, IT-20126 Milan, Italy

[7] Univ Pompeu Fabra, CSIC, Inst Biol Evolut, ES-08003 Barcelona, Spain

来源：

ECOGRAPHY | 2013年 / 36卷 / 10期

关键词：

REGIONS;

D O I：

10.1111/j.1600-0587.2013.00444.x

中图分类号：

X176 [生物多样性保护];

学科分类号：

090705 ;

摘要：

When dissimilarity matrices of faunistic and phylogenetic beta-diversity turnover indices are projected in dendrograms, a high frequency of ties and zero values produces trees whose topology and bootstrap support are affected by the order of areas in the original presence-absence matrix. We tested the magnitude of this bias and developed R functions to obtain consensus trees after shuffling of matrix row order and applied this algorithm to a multiscale bootstrap procedure. Our functions not only solve the bias of row order but, owing to varying support for different bootstrap scales, reveal fundamental characteristics about the structure of species assemblages.

引用

页码：1070 / 1075

页数：6

共 10 条

[1]

[Anonymous], 1988, NTSYS-PC: Numerical taxonomy and multivariate analysis system

[2] Partitioning the turnover and nestedness components of beta diversity [J].

Baselga, Andres .

GLOBAL ECOLOGY AND BIOGEOGRAPHY, 2010, 19 (01) :134-143

[3] Climatic history and dispersal ability explain the relative importance of turnover and nestedness components of beta diversity [J].

Dobrovolski, Ricardo ;

Melo, Adriano S. ;

Cassemiro, Fernanda A. S. ;

Felizola Diniz-Filho, Jose Alexandre .

GLOBAL ECOLOGY AND BIOGEOGRAPHY, 2012, 21 (02) :191-197

[4] An Update of Wallace's Zoogeographic Regions of the World [J].

Holt, Ben G. ;

Lessard, Jean-Philippe ;

Borregaard, Michael K. ;

Fritz, Susanne A. ;

Araujo, Miguel B. ;

Dimitrov, Dimitar ;

Fabre, Pierre-Henri ;

Graham, Catherine H. ;

Graves, Gary R. ;

Jonsson, Knud A. ;

Nogues-Bravo, David ;

Wang, Zhiheng ;

Whittaker, Robert J. ;

Fjeldsa, Jon ;

Rahbek, Carsten .

SCIENCE, 2013, 339 (6115) :74-78

[5] A framework for delineating biogeographical regions based on species distributions [J].

Kreft, Holger ;

Jetz, Walter .

JOURNAL OF BIOGEOGRAPHY, 2010, 37 (11) :2029-2053

[6]

Kudrna O., 2011, DISTRIBUTION ATLAS B

[7]

Legendre P., 1998, Numerical Ecology

[8] Quantifying Phylogenetic Beta Diversity: Distinguishing between 'True' Turnover of Lineages and Phylogenetic Diversity Gradients [J].

Leprieur, Fabien ;

Albouy, Camille ;

De Bortoli, Julien ;

Cowman, Peter F. ;

Bellwood, David R. ;

Mouillot, David .

PLOS ONE, 2012, 7 (08)

[9] On goodness-of-fit measure for dendrogram-based analyses [J].

Merigot, Bastien ;

Durbec, Jean-Pierre ;

Gaertner, Jean-Claude .

ECOLOGY, 2010, 91 (06) :1850-1859

[10] Pvclust: an R package for assessing the uncertainty in hierarchical clustering [J].

Suzuki, R ;

Shimodaira, H .

BIOINFORMATICS, 2006, 22 (12) :1540-1542

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