Metabolomic investigations of anaerobic hydrocarbon-impacted environments

被引:56
作者
Callaghan, Amy V. [1 ]
机构
[1] Univ Oklahoma, Dept Microbiol & Plant Biol, Norman, OK 73019 USA
基金
美国国家科学基金会;
关键词
REDUCING ENRICHMENT CULTURE; LANDFILL LEACHATE PLUME; ALKYLSUCCINATE SYNTHASE GENES; OIL-CONTAMINATED AQUIFER; TANDEM MASS-SPECTROMETRY; STABLE-ISOTOPE ANALYSIS; SOLID-PHASE EXTRACTION; IN-SITU; AROMATIC-HYDROCARBONS; DENITRIFYING BACTERIUM;
D O I
10.1016/j.copbio.2012.08.012
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Metabolomics is a powerful tool for the assessment of expressed (in vivo or in situ) biological processes. Metabolite profiling is often employed during field investigations of hydrocarbon-laden environments for the purpose(s) of determining the extent of intrinsic or enhanced natural attenuation of contaminants, developing remediation strategies, and/or gaining a better understanding of microbial processes. During the last twenty-five years, the elucidation of anaerobic biodegradation pathways has not only provided metabolic and molecular biomarkers for environmental assessments of anaerobic hydrocarbon metabolism, but also an avenue for integrative field studies. The combination of metabolomics with compound-specific isotope analysis, molecular surveys and/or microcosm studies has demonstrated the need for multiple assessment methods for better resolution of in situ microbial activity.
引用
收藏
页码:506 / 515
页数:10
相关论文
共 68 条
[1]   Identification of enzymes involved in anaerobic benzene degradation by a strictly anaerobic iron-reducing enrichment culture [J].
Abu Laban, Nidal ;
Selesi, Drazenka ;
Rattei, Thomas ;
Tischler, Patrick ;
Meckenstock, Rainer U. .
ENVIRONMENTAL MICROBIOLOGY, 2010, 12 (10) :2783-2796
[2]   Anaerobic hydrocarbon biodegradation in deep subsurface oil reservoirs [J].
Aitken, CM ;
Jones, DM ;
Larter, SR .
NATURE, 2004, 431 (7006) :291-294
[3]   Determination of alkylbenzene metabolites in groundwater by solid-phase extraction and liquid chromatography-tandem mass spectrometry [J].
Alumbaugh, RE ;
Gieg, LM ;
Field, JA .
JOURNAL OF CHROMATOGRAPHY A, 2004, 1042 (1-2) :89-97
[4]   High Resolution Analysis of Contaminated Aquifer Sediments and GroundwaterWhat Can be Learned in Terms of Natural Attenuation? [J].
Anneser, Bettina ;
Pilloni, Giovanni ;
Bayer, Anne ;
Lueders, Tillmann ;
Griebler, Christian ;
Einsiedl, Florian ;
Richters, Lars .
GEOMICROBIOLOGY JOURNAL, 2010, 27 (02) :130-142
[5]   Anaerobic cometabolic conversion of benzothiophene by a sulfate-reducing enrichment culture and in a tar-oil- contaminated aquifer [J].
Annweiler, E ;
Michaelis, W ;
Meckenstock, RU .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (11) :5077-5083
[6]  
BANWART SA, 2010, HDB HYDROCARBON LIPI, P2473
[7]   Natural attenuation of xenobiotic organic compounds in a landfill leachate plume (Vejen, Denmark) [J].
Baun, A ;
Reitzel, LA ;
Ledin, A ;
Christensen, TH ;
Bjerg, PL .
JOURNAL OF CONTAMINANT HYDROLOGY, 2003, 65 (3-4) :269-291
[8]   Comparative assessments of benzene, toluene, and xylene natural attenuation by quantitative polymerase chain reaction analysis of a catabolic gene, signature metabolites, and compound-specific isotope analysis [J].
Beller, Harry R. ;
Kane, Staci R. ;
Legler, Tina C. ;
McKelvie, Jennifer R. ;
Lollar, Barbara Sherwood ;
Pearson, Francesca ;
Balser, Lianna ;
MacKay, Douglas M. .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2008, 42 (16) :6065-6072
[9]   A real-time polymerase chain reaction method for monitoring anaerobic, hydrotarbon-degrading bacteria based on a catabolic gene [J].
Beller, HR ;
Kane, SR ;
Legler, TC ;
Alvarez, PJJ .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2002, 36 (18) :3977-3984
[10]   BY-PRODUCTS OF ANAEROBIC ALKYLBENZENE METABOLISM USEFUL AS INDICATORS OF IN-SITU BIOREMEDIATION [J].
BELLER, HR ;
DING, WH ;
REINHARD, M .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 1995, 29 (11) :2864-2870