Detection of herpesvirus and adenovirus co-infections with diagnostic DNA-microarrays

被引:15
作者
Mueler, Rene [1 ]
Ditzen, Anette [2 ]
Hille, Kristin [1 ]
Stichling, Markus [1 ]
Ehricht, Ralf [3 ]
Illmer, Thomas [4 ]
Ehninger, Gerhard [4 ]
Rohayem, Jacques [1 ]
机构
[1] Med Fak Carl Gustav Carus, Inst Virol, Calicilab, Dresden, Germany
[2] Univ Klinikum Carl Gustav Carus, Med Klin & Poliklin 3, Dresden, Germany
[3] CLONDIAG Chip Technol GmbH, Jena, Germany
[4] Univ Klinikum Carl Gustav Carus, Med Klin & Poliklin 1, Dresden, Germany
关键词
Diagnostic microarray; Co-infections; Immunosuppression; DNA-viruses; REAL-TIME PCR; VIRUS; RECIPIENTS; INFECTION; ARRAY; ASSAY;
D O I
10.1016/j.jviromet.2008.10.014
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In immunocompromised patients, the diagnosis of infections with herpesviruses and adenoviruses relies mainly on PCR amplification of viral genomic DNA from clinical samples. in the case of co-infections with two or more viruses, single amplification of viral DNA from clinical samples has proven to be time-consuming and expensive, hampering the efficient diagnosis and therapy of viral co-infections. In this study, a diagnostic DNA-microarray allowing simultaneous detection of herpes simplex virus types 1 and 2 (HSV 1/2), varicella zoster virus (VZV), Epstein-Barr virus (EBV), cytomegalovirus (CMV), human herpesvirus-6 types A and B (HHV-6 A/B), and adenovirus in clinical samples was developed and validated. The assay displays a high analytical sensitivity (10 genome equivalents (GE)/reaction) and specificity, being cost-effective and time-saving. Because the DNA-microarray uses the same analytical conditions as real-time quantitative PCR, it can be used as a screening device for multiple viral infections, followed by selective viral load measurement depending on the clinical context. Those features make the DNA-microarray an attractive device for the management of viral infections in immunocompromised patients. (C) 2008 Elsevier B.V. All rights reserved.
引用
收藏
页码:161 / 166
页数:6
相关论文
共 18 条
  • [1] DNA microarrays for virus detection in cases of central nervous system infection
    Boriskin, YS
    Rice, PS
    Stabler, RA
    Hinds, J
    Al-Ghusein, H
    Vass, K
    Butcher, PD
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (12) : 5811 - 5818
  • [2] A role for arrays in clinical virology: fact or fiction?
    Clewley, JP
    [J]. JOURNAL OF CLINICAL VIROLOGY, 2004, 29 (01) : 2 - 12
  • [3] Optimized DNA microarray assay allows detection and genotyping of single PCR-amplifiable target copies
    Ehricht, R
    Slickers, P
    Goellner, S
    Hotzel, H
    Sachse, K
    [J]. MOLECULAR AND CELLULAR PROBES, 2006, 20 (01) : 60 - 63
  • [4] Rapid and quantitative detection of human adenovirus DNA by real-time PCR
    Heim, A
    Ebnet, C
    Harste, G
    Pring-Åkerblom, P
    [J]. JOURNAL OF MEDICAL VIROLOGY, 2003, 70 (02) : 228 - 239
  • [5] Prospective monitoring of the Epstein-Barr virus DNA by a real-time quantitative polymerase chain reaction after allogenic stem cell transplantation
    Hoshino, Y
    Kimura, H
    Tanaka, N
    Tsuge, I
    Kudo, K
    Horibe, K
    Kato, K
    Matsuyama, T
    Kikuta, A
    Kojima, S
    Morishima, T
    [J]. BRITISH JOURNAL OF HAEMATOLOGY, 2001, 115 (01) : 105 - 111
  • [6] KESSLER H, 2001, RAPID CYCLE REAL TIM
  • [7] Quantitative analysis of Epstein-Barr virus load by using a real-time PCR assay
    Kimura, H
    Morita, M
    Yabuta, Y
    Kuzushima, K
    Kato, K
    Kojima, S
    Matsuyama, T
    Morishima, T
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 1999, 37 (01) : 132 - 136
  • [8] Adenovirus infections in the immunocompromised host
    Krilov, LR
    [J]. PEDIATRIC INFECTIOUS DISEASE JOURNAL, 2005, 24 (06) : 555 - 556
  • [9] MONECKE S, 2003, GENOME LETT, V2, P106
  • [10] Microarray-based detection of 90 antibiotic resistance genes of gram-positive bacteria
    Perreten, V
    Vorlet-Fawer, L
    Slickers, P
    Ehricht, R
    Kuhnert, P
    Frey, J
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2005, 43 (05) : 2291 - 2302