CRITERIA FOR AN UPDATED CLASSIFICATION OF HUMAN TRANSCRIPTION FACTOR DNA-BINDING DOMAINS

被引：8

作者：

Wingender, Edgar ^{[1
,2
]}

机构：

[1] Univ Med Ctr Groningen, Dept Bioinformat, D-37077 Gottingen, Germany

[2] geneXplain GmbH, D-38302 Wolfenbuttel, Germany

来源：

JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY | 2013年 / 11卷 / 01期

关键词：

Transcription factors; DNA-binding domains; classification; CRYSTAL-STRUCTURE; STRUCTURAL BASIS; COMPLEX REVEALS; GLUCOCORTICOID-RECEPTOR; PROTEIN; BOX; SEQUENCE; RECOGNITION; NOMENCLATURE; ELEMENT;

D O I：

10.1142/S0219720013400076

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

By binding to cis-regulatory elements in a sequence-specific manner, transcription factors regulate the activity of nearby genes. Here, we discuss the criteria for a comprehensive classification of human TFs based on their DNA-binding domains. In particular, classification of basic leucine zipper (bZIP) and zinc finger factors is exemplarily discussed. The resulting classification can be used as a template for TFs of other biological species.

引用

页数：21

共 50 条

[21] The combination of sequence-specific and nonspecific DNA-binding modes of transcription factor SATB1
Yamasaki, Kazuhiko
Yamasaki, Tomoko
BIOCHEMICAL JOURNAL, 2016, 473 : 3321 - 3339
[22] Myb transcription factors in the oomycete Phytophthora with novel diversified DNA-binding domains and developmental stage-specific expression
Xiang, Qijun
Judelson, Howard S.
GENE, 2010, 453 (1-2) : 1 - 8
[23] Dissecting the Repertoire of DNA-Binding Transcription Factors of the Archaeon Pyrococcus furiosus DSM 3638
Denis, Antonia
Alberto Martinez-Nunez, Mario
Tenorio-Salgado, Silvia
Perez-Rueda, Ernesto
LIFE-BASEL, 2018, 8 (04):
[24] The role of phosphorylatable serine residues in the DNA-binding domain of Arabidopsis bZIP transcription factors
Kirchler, Tobias
Briesemeister, Sebastian
Singer, Miriam
Schuetze, Katia
Keinath, Melanie
Kohlbacher, Oliver
Vicente-Carbajosa, Jesus
Teige, Markus
Harter, Klaus
Chaban, Christina
EUROPEAN JOURNAL OF CELL BIOLOGY, 2010, 89 (2-3) : 175 - 183
[25] Redefining the DNA-Binding Domain of Human XPA
Sugitani, Norie
Shell, Steven M.
Soss, Sarah E.
Chazin, Walter J.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2014, 136 (31) : 10830 - 10833
[26] The Biophysical Basis for Phosphorylation-Enhanced DNA-Binding Autoinhibition of the ETS1 Transcription Factor
Perez-Borrajero, Cecilia
Lin, Chang Sheng-Huei
Okon, Mark
Scheu, Karlton
Graves, Barbara J.
Murphy, Michael E. P.
McIntosh, Lawrence P.
JOURNAL OF MOLECULAR BIOLOGY, 2019, 431 (03) : 593 - 614
[27] Multiple DNA-binding modes for the ETS family transcription factor PU.1
Esaki, Shingo
Evich, Marina G.
Erlitzki, Noa
Germann, Markus W.
Poon, Gregory M. K.
JOURNAL OF BIOLOGICAL CHEMISTRY, 2017, 292 (39) : 16044 - 16054
[28] Caenorhabditis elegans transposable elements harbor diverse transcription factor DNA-binding sites
Garrigues, Jacob M.
Pasquinelli, Amy E.
G3-GENES GENOMES GENETICS, 2022, 12 (03):
[29] A graphene oxide (GO)-based molecular beacon for DNA-binding transcription factor detection
Liu, Jing-Jing
Song, Xiao-Rong
Wang, Yi-Wei
Chen, Guo-Nan
Yang, Huang-Hao
NANOSCALE, 2012, 4 (12) : 3655 - 3659
[30] FT Modulates Genome-Wide DNA-Binding of the bZIP Transcription Factor FD
Collani, Silvio
Neumann, Manuela
Yant, Levi
Schmid, Markus
PLANT PHYSIOLOGY, 2019, 180 (01) : 367 - 380

← 1 2 3 4 5 →