Novel bacterial clade reveals origin of form I Rubisco

被引:50
作者
Banda, Douglas M. [1 ,2 ]
Pereira, Jose H. [3 ,4 ]
Liu, Albert K. [1 ,2 ]
Orr, Douglas J. [5 ]
Hammel, Michal [4 ]
He, Christine [6 ]
Parry, Martin A. J. [5 ]
Carmo-Silva, Elizabete [5 ]
Adams, Paul D. [3 ,4 ]
Banfield, Jillian F. [6 ,7 ,8 ,9 ]
Shih, Patrick M. [1 ,2 ,10 ,11 ]
机构
[1] Univ Calif Davis, Dept Plant Biol, Davis, CA 95616 USA
[2] Lawrence Berkeley Natl Lab, Environm Genom & Syst Biol Div, Berkeley, CA 94720 USA
[3] Joint BioEnergy Inst, Div Technol, Emeryville, CA USA
[4] Lawrence Berkeley Natl Lab, Mol Biophys & Integrated Bioimaging Div, Berkeley, CA USA
[5] Univ Lancaster, Lancaster Environm Ctr, Lancaster, England
[6] Univ Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
[7] Univ Calif Berkeley, Dept Environm Sci Policy & Management, Berkeley, CA 94720 USA
[8] Univ Calif Berkeley, Innovat Genom Inst, Berkeley, CA 94720 USA
[9] Chan Zuckerberg Biohub, San Francisco, CA 94158 USA
[10] Joint BioEnergy Inst, Feedstocks Div, Emeryville, CA 94608 USA
[11] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA
基金
英国生物技术与生命科学研究理事会;
关键词
RIBULOSE-BISPHOSPHATE CARBOXYLASE; SMALL-SUBUNIT; 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE; EVOLUTION; PROTEINS; CHAPERONE; SEQUENCE; SPECIFICITY; TRANSITION; RESOLUTION;
D O I
10.1038/s41477-020-00762-4
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Rubisco sustains the biosphere through the fixation of CO(2)into biomass. In plants and cyanobacteria, form I Rubisco is structurally comprised of large and small subunits, whereas all other Rubisco forms lack small subunits. The rise of the form I complex through the innovation of small subunits represents a key, yet poorly understood, transition in Rubisco's evolution. Through metagenomic analyses, we discovered a previously uncharacterized clade sister to form I Rubisco that evolved without small subunits. This clade diverged before the evolution of cyanobacteria and the origin of the small subunit; thus, it provides a unique reference point to advance our understanding of form I Rubisco evolution. Structural and kinetic data presented here reveal how a proto-form I Rubisco assembled and functioned without the structural stability imparted from small subunits. Our findings provide insight into a key evolutionary transition of the most abundant enzyme on Earth and the predominant entry point for nearly all global organic carbon. Metagenomic analysis has uncovered a previously uncharacterized clade of Rubisco related to form I Rubisco found in plants and cyanobacteria. Structural and kinetic data show how this proto-form I Rubisco assembles and functions without small subunits.
引用
收藏
页码:1158 / +
页数:21
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