Computational prediction and in vitro validation of VEGFR1 as a novel protein target for 2,3,7,8-tetrachlorodibenzo-p-dioxin

被引:5
作者
Chitrala, Kumaraswamy Naidu [1 ]
Yang, Xiaoming [1 ]
Busbee, Brandon [1 ]
Singh, Narendra P. [1 ]
Bonati, Laura [2 ]
Xing, Yongna [3 ]
Nagarkatti, Prakash [1 ]
Nagarkatti, Mitzi [1 ]
机构
[1] Univ South Carolina, Dept Pathol Microbiol & Immunol, Sch Med, Columbia, SC 29208 USA
[2] Univ Milano Bicocca, Dept Earth & Environm Sci, Milan, Italy
[3] Univ Wisconsin Madison, McArdle Lab Canc Res, Madison, WI USA
关键词
ARYL-HYDROCARBON RECEPTOR; REGULATORY T-CELLS; LIGAND-BINDING; WEB SERVER; GROWTH-FACTOR; FORCE-FIELD; INDUCTION; APOPTOSIS; DIOXIN; IDENTIFICATION;
D O I
10.1038/s41598-019-43232-4
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The toxic manifestations of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), an environmental contaminant, primarily depend on its ability to activate aryl hydrocarbon receptor (AhR), which is a ligand-dependent transcription factor belonging to the superfamily of basic-helix-loop-helix DNA-binding proteins. In the present study, we aimed to identify novel protein receptor targets for TCDD using computational and in vitro validation experiments. Interestingly, results from computational methods predicted that Vascular Endothelial Growth Factor Receptor 1 (VEGFR1) could be one of the potential targets for TCDD in both mouse and humans. Results from molecular docking studies showed that human VEGFR1 (hVEGFR1) has less affinity towards TCDD compared to the mouse VEGFR1 (mVEGFR1). In vitro validation results showed that TCDD can bind and phosphorylate hVEGFR1. Further, results from molecular dynamic simulation studies showed that hVEGFR1 interaction with TCDD is stable throughout the simulation time. Overall, the present study has identified VEGFR1 as a novel target for TCDD, which provides the basis for further elucidating the role of TCDD in angiogenesis.
引用
收藏
页数:12
相关论文
共 71 条
[1]  
Alfuwaires M, 2017, BIOL PHARM BULL, V40, P345, DOI 10.1248/bpb.b16-00870
[2]  
[Anonymous], 2012, BMC RES NOTES, DOI DOI 10.1186/1756-0500-5-185
[3]   Ah receptor- and TCDD-mediated liver tumor promotion:: clonal selection and expansion of cells evading growth arrest and apoptosis -: Commentary [J].
Bock, KW ;
Köhle, C .
BIOCHEMICAL PHARMACOLOGY, 2005, 69 (10) :1403-1408
[4]   Natural Indoles, Indole-3-Carbinol (I3C) and 3,3′-Diindolylmethane (DIM), Attenuate Staphylococcal Enterotoxin B-Mediated Liver Injury by Downregulating miR-31 Expression and Promoting Caspase-2-Mediated Apoptosis [J].
Busbee, Philip B. ;
Nagarkatti, Mitzi ;
Nagarkatti, Prakash S. .
PLOS ONE, 2015, 10 (02)
[5]   Natural indoles, indole-3-carbinol and 3,3′-diindolymethane, inhibit T cell activation by staphylococcal enterotoxin B through epigenetic regulation involving HDAC expression [J].
Busbee, Philip B. ;
Nagarkatti, Mitzi ;
Nagarkatti, Prakash S. .
TOXICOLOGY AND APPLIED PHARMACOLOGY, 2014, 274 (01) :7-16
[6]   Identification and analysis of conserved pockets on protein surfaces [J].
Cammisa, Marco ;
Correra, Antonella ;
Andreotti, Giuseppina ;
Cubellis, Maria Vittoria .
BMC BIOINFORMATICS, 2013, 14
[7]   The crystal structure of placental growth factor in complex with domain 2 of vascular endothelial growth factor receptor-1 [J].
Christinger, HW ;
Fuh, G ;
de Vos, AM ;
Wiesmann, C .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (11) :10382-10388
[8]  
Dallakyan S, 2015, METHODS MOL BIOL, V1263, P243, DOI 10.1007/978-1-4939-2269-7_19
[9]   Exactly the Same but Different: Promiscuity and Diversity in the Molecular Mechanisms of Action of the Aryl Hydrocarbon (Dioxin) Receptor [J].
Denison, Michael S. ;
Soshilov, Anatoly A. ;
He, Guochun ;
DeGroot, Danica E. ;
Zhao, Bin .
TOXICOLOGICAL SCIENCES, 2011, 124 (01) :1-22
[10]   Target identification, lead optimization and antitumor evaluation of some new 1,2,4-triazines as c-Met kinase inhibitors [J].
El-Wakil, Marwa H. ;
Ashour, Hayam M. ;
Saudi, Manal N. ;
Hassan, Ahmed M. ;
Labouta, Ibrahim M. .
BIOORGANIC CHEMISTRY, 2017, 73 :154-169