The occurrence and function of alternative splicing in fungi

被引:1
作者
Fang, Shumei [1 ]
Hou, Xue [1 ]
Qiu, Kaihua [1 ]
He, Rui [1 ]
Feng, Xiaoshuo [1 ]
Liang, Xilong [1 ,2 ]
机构
[1] Heilongjiang Bayi Agr Univ, Daqing 163319, Peoples R China
[2] Heilongjiang Plant Growth Regulator Engn Technol, Daqing 163319, Peoples R China
关键词
Alternative splicing; Biological functions; DNA methylation; Fungi; Genomic structure characteristics; Splicing factors; TPP riboswitches; PRE-MESSENGER-RNA; GENOME SEQUENCE; GENE-EXPRESSION; TRANSCRIPTION; ELONGATION; DIVERSITY; PROTEIN; STRESS; SPLICEOSOME; MECHANISMS;
D O I
10.1016/j.fbr.2070.10.001
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Alternative splicing is a common but complex posttranscriptional regulatory process in eu-karyotes, through which multiple different transcripts are produced from a single premRNA. An increasing number of studies have revealed that alternative splicing is widespread in fungi. Intron retention (IR) is considered the most prevalent splicing type due to the relatively short introns and long exons involved in this process. Alternative splicing is coordinated by a variety of factors, including genomic structure characteristics, TPP riboswitches, splicing factors and DNA methylation, and is involved in the regulation of growth and development, and the improvement of survivability and pathogenicity. Taken together, the results show that alternative splicing events are fungal evolutionary adaptations to changing external conditions. (C) 2020 British Mycological Society. Published by Elsevier Ltd. All rights reserved.
引用
收藏
页码:178 / 188
页数:11
相关论文
共 106 条
[1]   Splicing-Dependent RNA Polymerase Pausing in Yeast [J].
Alexander, Ross D. ;
Innocente, Steven A. ;
Barrass, J. David ;
Beggs, Jean D. .
MOLECULAR CELL, 2010, 40 (04) :582-593
[2]  
Andree N., 2016, ENDOCYTOBIOSIS CELL, V27, P27
[3]  
[Anonymous], 2019, PHYTOPATHOLOGY RES
[4]   Splicing Functions and Global Dependency on Fission Yeast Slu7 Reveal Diversity in Spliceosome Assembly [J].
Banerjee, Shataparna ;
Khandelia, Piyush ;
Melangath, Geetha ;
Bashir, Samirul ;
Nagampalli, Vijaykrishna ;
Vijayraghavan, Usha .
MOLECULAR AND CELLULAR BIOLOGY, 2013, 33 (16) :3125-3136
[5]   Pharmacology of Modulators of Alternative Splicing [J].
Bates, David O. ;
Morris, Jonathan C. ;
Oltean, Sebastian ;
Donaldson, Lucy F. .
PHARMACOLOGICAL REVIEWS, 2017, 69 (01) :63-79
[6]   Riboswitch regulation mechanisms: RNA, metabolites and regulatory proteins [J].
Bedard, Anne-Sophie Vezina ;
Hien, Elsa D. M. ;
Lafontaine, Daniel A. .
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2020, 1863 (03)
[7]   The mRNA assembly line: transcription and processing machines in the same factory [J].
Bentley, D .
CURRENT OPINION IN CELL BIOLOGY, 2002, 14 (03) :336-342
[8]   Progression through the RNA Polymerase II CTD Cycle [J].
Buratowski, Stephen .
MOLECULAR CELL, 2009, 36 (04) :541-546
[9]   Alternative Splicing in the Obligate Biotrophic Oomycete Pathogen Pseudoperonospora cubensis [J].
Burkhardt, Alyssa ;
Buchanan, Alex ;
Cumbie, Jason S. ;
Savory, Elizabeth A. ;
Chang, Jeff H. ;
Day, Brad .
MOLECULAR PLANT-MICROBE INTERACTIONS, 2015, 28 (03) :298-309
[10]   Control of alternative RNA splicing and gene expression by eukaryotic riboswitches [J].
Cheah, Ming T. ;
Wachter, Andreas ;
Sudarsan, Narasimhan ;
Breaker, Ronald R. .
NATURE, 2007, 447 (7143) :497-U7