Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding

被引:23
|
作者
Choi, Hong-Kyu [1 ]
机构
[1] Dong A Univ, Dept Mol Genet, Coll Nat Resources & Life Sci, Nakdong Daero 550,Beongil 37, Busan 49315, South Korea
基金
新加坡国家研究基金会;
关键词
Translational genomics; Omics; Crop breeding; Database; Platform; WHOLE-GENOME; DATABASE; INFORMATION; RESOURCE; RICE; DOMESTICATION; ARTEMIS; GENES; MAIZE; BIOINFORMATICS;
D O I
10.1007/s13258-018-0751-8
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Recent next generation sequencing-driven mass production of genomic data and multi-omics-integrated approaches have significantly contributed to broadening and deepening our knowledge on the molecular system of living organisms. Accordingly, translational genomics (TG) approach can play a pivotal role in creating an informational bridge between model systems and relatively less studied plants. This review focuses mainly on addressing recent advancement in omics-related technologies, a diverse array of bioinformatic resources and potential applications of TG for the crop breeding. To accomplish above objectives, information on omics data production, various DBs and high throughput technologies was collected, integrated, and used to analyze current status and future perspectives towards omics-assisted crop breeding. Various omics data and resources have been organized and integrated into the databases and/or bioinformatic infrastructures, and thereby serve as the ome's information center for cross-genome translation of biological data. Although the size of accumulated omics data and availability of reference genomes are different among plant families, translational approaches have been actively progressing to access particular biological characteristics. When multi-layered omics data are integrated in a synthetic manner, it will allow providing a stereoscopic view of dynamic molecular behavior and interacting networks of genes occurring in plants. Consequently, TG approach will lead us to broader and deeper insights into target traits for the plant breeding. Furthermore, such systems approach will renovate conventional breeding programs and accelerate precision crop breeding in the future.
引用
收藏
页码:133 / 146
页数:14
相关论文
共 50 条
  • [1] Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding
    Hong-Kyu Choi
    Genes & Genomics, 2019, 41 : 133 - 146
  • [2] Machine learning and systems genomics approaches for multi-omics data
    Lin, Eugene
    Lane, Hsien-Yuan
    BIOMARKER RESEARCH, 2017, 5
  • [3] Machine learning and systems genomics approaches for multi-omics data
    Eugene Lin
    Hsien-Yuan Lane
    Biomarker Research, 5
  • [4] Goose multi-omics database: A comprehensive multi-omics database for goose genomics
    Huang, Mingjiang
    Sun, Jiahe
    Wang, Jian
    Ye, Xiaoli
    Chen, Zhuping
    Zhao, Xianzhi
    Zhang, Keshan
    Ma, Lin
    Xue, Jiajia
    Luo, Yi
    Wu, Xianwen
    Wang, Haiwei
    Wang, Chao
    Liu, Zuohua
    Xie, Youhui
    Chen, Ying
    Wang, Qigui
    Wang, Yi
    Gao, Guangliang
    POULTRY SCIENCE, 2025, 104 (03)
  • [5] ArecaceaeMDB: a comprehensive multi-omics database for Arecaceae breeding and functional genomics studies
    Yang, Zhuang
    Liu, Zhenhuan
    Xu, Hang
    Li, Yufei
    Huang, Sishu
    Cao, Guangping
    Shi, Mengwei
    Zhu, Jinjin
    Zhou, Junjie
    Li, Runze
    Ding, Yuanhao
    Xiao, Yong
    Liu, Xianqing
    Fernie, Alisdair R.
    Luo, Jie
    PLANT BIOTECHNOLOGY JOURNAL, 2023, 21 (01) : 11 - 13
  • [6] Integrated multi-omics analysis of genomics, epigenomics, and transcriptomics in ovarian carcinoma
    Zheng, Mingjun
    Hu, Yuexin
    Gou, Rui
    Wang, Jing
    Nie, Xin
    Li, Xiao
    Liu, Qing
    Liu, Juanjuan
    Lin, Bei
    AGING-US, 2019, 11 (12): : 4198 - 4215
  • [7] Multi-omics approaches to disease
    Yehudit Hasin
    Marcus Seldin
    Aldons Lusis
    Genome Biology, 18
  • [8] Multi-omics approaches to disease
    Hasin, Yehudit
    Seldin, Marcus
    Lusis, Aldons
    GENOME BIOLOGY, 2017, 18
  • [9] Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets
    Sun, Min
    Yan, Haidong
    Zhang, Aling
    Jin, Yarong
    Lin, Chuang
    Luo, Lin
    Wu, Bingchao
    Fan, Yuhang
    Tian, Shilin
    Cao, Xiaofang
    Wang, Zan
    Luo, Jinchan
    Yang, Yuchen
    Jia, Jiyuan
    Zhou, Puding
    Tang, Qianzi
    Jones, Chris Stephen
    Varshney, Rajeev K. K.
    Srivastava, Rakesh K. K.
    He, Min
    Xie, Zheni
    Wang, Xiaoshan
    Feng, Guangyan
    Nie, Gang
    Huang, Dejun
    Zhang, Xinquan
    Zhu, Fangjie
    Huang, Linkai
    PLANT BIOTECHNOLOGY JOURNAL, 2023, 21 (11) : 2348 - 2357
  • [10] Multi-omics analysis based on integrated genomics, epigenomics and transcriptomics in pancreatic cancer
    Kong, Lingming
    Liu, Peng
    Zheng, Mingjun
    Xue, Busheng
    Liang, Keke
    Tan, Xiaodong
    EPIGENOMICS, 2020, 12 (06) : 507 - 524