Molecular characterizations of two grapevine rupestris stem pitting-associated virus isolates from China

被引：17

作者：

Hu, Guo-Jun ^{[1
]}

Dong, Ya-Feng ^{[1
]}

Zhu, Hong-Juan ^{[1
]}

Zhang, Zun-Ping ^{[1
]}

Fan, Xu-Dong ^{[1
]}

Ren, Fang ^{[1
]}

Zhou, Jun ^{[1
]}

机构：

[1] Chinese Acad Agr Sci, Res Inst Pomol, Natl Ctr Eliminating Viruses Deciduous Fruit Tree, Xingcheng 125100, Peoples R China

来源：

ARCHIVES OF VIROLOGY | 2015年 / 160卷 / 10期

关键词：

NUCLEOTIDE-SEQUENCE; GENETIC DIVERSITY; GENOME STRUCTURE; RT-PCR; FOVEAVIRUS; RECOMBINATION; LOCALIZATION; VARIANTS; PROTEIN; CLONES;

D O I：

10.1007/s00705-015-2544-6

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The complete nucleotide sequences of two isolates of grapevine rupestris stem pitting-associated virus (LSL and JF) collected from grapevine of Xingcheng in Liaoning Province, China, were determined. The genomes of both LSL and JF were found to contain five open reading frames (ORFs). Sequence alignments showed that the genomic sequences of JF were 76.1 %-83.5 % identical to the other ten GRSPaV isolates that have been reported previously and that the nucleotide sequence identity of isolate LSL to other isolates was no more than 78 %. Phylogenetic analysis based on the complete genome sequence indicated that JF belongs to group III and that LSL belongs to a new group (group IV). The average genetic distances of the new genetic lineage from groups I, II and III were 0.34, 0.32 and 0.33, respectively.

引用

页码：2641 / 2645

页数：5

共 50 条

[21] The capsid protein of Grapevine rupestris stem pitting-associated virus contains a typical nuclear localization signal and targets to the nucleus [J].

Meng, Baozhong ;

Li, Caihong .

VIRUS RESEARCH, 2010, 153 (02) :212-217

[22] Detection of multiple sequence variants of Grapevine rupestris stem pitting-associated virus using primers targeting the polymerase domain and partial genome sequencing of a novel variant [J].

Terlizzi, F. ;

Li, C. ;

Ratti, C. ;

Qiu, W. ;

Credi, R. ;

Meng, B. .

ANNALS OF APPLIED BIOLOGY, 2011, 159 (03) :478-490

[23] Sequence diversity, population genetics and potential recombination events in grapevine rupestris stem pitting-associated virus in Pacific North-West vineyards [J].

Alabi, Olufemi J. ;

Martin, Robert R. ;

Naidu, Rayapati A. .

JOURNAL OF GENERAL VIROLOGY, 2010, 91 :265-276

[24] Elimination of Grapevine leafroll associated virus-3, Grapevine rupestris stem pitting associated virus and Grapevine virus A from a Tunisian Cultivar by Somatic Embryogenesis and Characterization of the Somaclones Using Ampelographic Descriptors [J].

Bouamama-Gzara, Badra ;

Sehmi, Ilhem ;

Chebil, Samir ;

Melki, Imene ;

Mliki, Ahmed ;

Ghorbel, Abdelwahed ;

Carra, Angela ;

Carimi, Francesco ;

Mahfoudhi, Naima .

PLANT PATHOLOGY JOURNAL, 2017, 33 (06) :561-571

[25] GENOMIC STUDY AND DETECTION OF A NEW VARIANT OF GRAPEVINE RUPESTRIS STEM PITTING ASSOCIATED VIRUS IN DECLINING CALIFORNIA PINOT NOIR GRAPEVINES [J].

LiMA, M. ;

Alkowni, R. ;

Uyemoto, J. K. ;

Rowhani, A. .

JOURNAL OF PLANT PATHOLOGY, 2009, 91 (01) :155-162

[26] Detection of viruses associated with rugose wood in Japanese grapevines and analysis of genomic variability of Rupestris stem pitting-associated virus [J].

Nakaune, Ryoji ;

Inoue, Koji ;

Nasu, Hideo ;

Kakogawa, Katsura ;

Nitta, Hiromichi ;

Imada, Jun ;

Nakano, Masaaki .

JOURNAL OF GENERAL PLANT PATHOLOGY, 2008, 74 (02) :156-163

[27] Rupestris stem pitting associated virus-1 is consistently detected in grapevines that are infected with rupestris stem pitting [J].

Meng, BZ ;

Johnson, R ;

Peressini, S ;

Forsline, PL ;

Gonsalves, D .

EUROPEAN JOURNAL OF PLANT PATHOLOGY, 1999, 105 (02) :191-199

[28] Rupestris Stem Pitting Associated Virus-1 is Consistently Detected in Grapevines that are Infected with Rupestris Stem Pitting [J].

Baozhong Meng ;

Ray Johnson ;

Silvano Peressini ;

Philip L. Forsline ;

Dennis Gonsalves .

European Journal of Plant Pathology, 1999, 105 :191-199

[29] Genetic diversity and evolution of Apple stem pitting virus isolates from pear in China [J].

Ma, Xiaofang ;

Hong, Ni ;

Moffett, Peter ;

Wang, Guoping .

CANADIAN JOURNAL OF PLANT PATHOLOGY, 2016, 38 (02) :218-230

[30] Distribution of Rupestris stem-pitting-associated virus variants in two Australian vineyards showing different symptoms [J].

Habili, N ;

Farrokhi, N ;

Lima, MF ;

Nicholas, P ;

Randles, JW .

ANNALS OF APPLIED BIOLOGY, 2006, 148 (01) :91-96

← 1 2 3 4 5 →