Essentiality of a non-RING element in priming donor ubiquitin for catalysis by a monomeric E3

被引:110
作者
Dou, Hao [1 ]
Buetow, Lori [1 ]
Sibbet, Gary J. [1 ]
Cameron, Kenneth [1 ]
Huang, Danny T. [1 ]
机构
[1] Beatson Inst Canc Res, Glasgow G61 1BD, Lanark, Scotland
关键词
LIGASE ACTIVITY; CONJUGATING ENZYME; STRUCTURAL INSIGHTS; NEDD8; ACTIVATION; C-CBL; COMPLEX; MECHANISM; DOMAIN; TYROSINE; SYSTEM;
D O I
10.1038/nsmb.2621
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
RING E3 ligases catalyze the transfer of ubiquitin (Ub) from E2 ubiquitin-conjugating enzyme thioesterified with Ub (E2 similar to Ub) to substrate. For RING E3 dimers, the RING domain of one subunit and tail of the second cooperate to prime Ub, but how this is accomplished by monomeric RING E3s in the absence of a tail-like component is currently unknown. Here, we present a crystal structure of a monomeric RING E3, Tyr363-phosphorylated human CBL-B, bound to a stabilized Ub-linked E2, revealing a similar mechanism in activating E2 similar to Ub. Both pTyr363 and the pTyr363-induced element interact directly with Ub's Ile36 surface, improving the catalytic efficiency of Ub transfer by similar to 200-fold. Hence, interactions outside the canonical RING domain are crucial for optimizing Ub transfer in both monomeric and dimeric RING E3s. We propose that an additional non-RING Ub-priming element may be a common RING E3 feature.
引用
收藏
页码:982 / +
页数:6
相关论文
共 42 条
[1]   PHENIX:: building new software for automated crystallographic structure determination [J].
Adams, PD ;
Grosse-Kunstleve, RW ;
Hung, LW ;
Ioerger, TR ;
McCoy, AJ ;
Moriarty, NW ;
Read, RJ ;
Sacchettini, JC ;
Sauter, NK ;
Terwilliger, TC .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :1948-1954
[2]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[3]   Conservation in the mechanism of nedd8 activation by the human AppBp1-Uba3 heterodimer [J].
Bohnsack, RN ;
Haas, AL .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (29) :26823-26830
[4]   A UbcH5/ubiquitin noncovalent complex is required for processive BRCA1-directed ubiquitination [J].
Brzovic, PS ;
Lissounov, A ;
Christensen, DE ;
Hoyt, DW ;
Klevit, RE .
MOLECULAR CELL, 2006, 21 (06) :873-880
[5]   RINGs hold the key to ubiquitin transfer [J].
Budhidarmo, Rhesa ;
Nakatani, Yoshio ;
Day, Catherine L. .
TRENDS IN BIOCHEMICAL SCIENCES, 2012, 37 (02) :58-65
[6]   A RING E3-substrate complex poised for ubiquitin-like protein transfer: structural insights into cullin-RING ligases [J].
Calabrese, Matthew F. ;
Scott, Daniel C. ;
Duda, David M. ;
Grace, Christy R. R. ;
Kurinov, Igor ;
Kriwacki, Richard W. ;
Schulman, Brenda A. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2011, 18 (08) :947-949
[7]   RING Domain E3 Ubiquitin Ligases [J].
Deshaies, Raymond J. ;
Joazeiro, Claudio A. P. .
ANNUAL REVIEW OF BIOCHEMISTRY, 2009, 78 :399-434
[8]   Structural model of the UbcH5B/CNOT4 complex revealed by combining NMR, mutagenesis, and docking approaches [J].
Dominguez, C ;
Bonvin, AMJJ ;
Winkler, GS ;
van Schaik, FMA ;
Timmers, HTM ;
Boelens, R .
STRUCTURE, 2004, 12 (04) :633-644
[9]   BIRC7-E2 ubiquitin conjugate structure reveals the mechanism of ubiquitin transfer by a RING dimer [J].
Dou, Hao ;
Buetow, Lori ;
Sibbet, Gary J. ;
Cameron, Kenneth ;
Huang, Danny T. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2012, 19 (09) :876-883
[10]   Structural basis for autoinhibition and phosphorylation-dependent activation of c-Cbl [J].
Dou, Hao ;
Buetow, Lori ;
Hock, Andreas ;
Sibbet, Gary J. ;
Vousden, Karen H. ;
Huang, Danny T. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2012, 19 (02) :184-192