Route of NCLDV evolution: the genomic accordion

被引：56

作者：

Filee, Jonathan ^{[1
]}

机构：

[1] Univ Paris 11, CNRS UPR 9034, Lab Evolut Genomes & Speciat, F-91198 Gif Sur Yvette, France

来源：

CURRENT OPINION IN VIROLOGY | 2013年 / 3卷 / 05期

关键词：

DNA VIRUSES; GENES; VIROPHAGE; ORIGIN; ACQUISITION; HIGHLIGHTS; COMPLEXITY; DIVERSITY; SEQUENCE;

D O I：

10.1016/j.coviro.2013.07.003

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Nucleo cytoplasmic large DNA virus (NCLDV) superfamily forms a diverse group of viruses that infects a wide range of eukaryotic hosts (e.g. vertebrates, insects, protests, etc.). These viruses are characterized by a huge range in genome size (between 100 kb and 1.2 Mb), coupled with an extraordinary diverse genomic repertoire. Here I will review some recent results that shed light on the origin and genome evolution of these viruses, introducing the idea that these viruses evolved using a complex process of genomic accordion that imply successive steps of genome expansions (duplication and gene transfers) and genome reduction, in addition to movement and amplification of diverse mobile genetic elements.

引用

收藏

页码：595 / 599

页数：5

相关论文

共 27 条

[1] Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae [J].

Arslan, Defne ;

Legendre, Matthieu ;

Seltzer, Virginie ;

Abergel, Chantal ;

Claverie, Jean-Michel .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (42) :17486-17491

[2] Characteristics of inteins in invertebrate iridoviruses and factors controlling insertion in their viral hosts [J].

Bigot, Yves ;

Piegu, Benoit ;

Casteret, Sophie ;

Gavory, Frederick ;

Bideshi, Dennis K. ;

Federici, Brian A. .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 67 (01) :246-254

[3] Mimivirus shows dramatic genome reduction after intraamoebal culture [J].

Boyer, Michael ;

Azza, Said ;

Barrassi, Lina ;

Klose, Thomas ;

Campocasso, Angelique ;

Pagnier, Isabelle ;

Fournous, Ghislain ;

Borg, Audrey ;

Robert, Catherine ;

Zhang, Xinzheng ;

Desnues, Christelle ;

Henrissat, Bernard ;

Rossmann, Michael G. ;

La Scola, Bernard ;

Raoult, Didier .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (25) :10296-10301

[4] Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms [J].

Boyer, Mickael ;

Yutin, Natalya ;

Pagnier, Isabelle ;

Barrassi, Lina ;

Fournous, Ghislain ;

Espinosa, Leon ;

Robert, Catherine ;

Azza, Said ;

Sun, Siyang ;

Rossmann, Michael G. ;

Suzan-Monti, Marie ;

La Scola, Bernard ;

Koonin, Eugene V. ;

Raoult, Didier .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (51) :21848-21853

[5] Viruses take center stage in cellular evolution [J].

Claverie, Jean-Michel .

GENOME BIOLOGY, 2006, 7 (06)

[6]

Colson Philippe, 2011, Genome Biol Evol, V3, P737, DOI 10.1093/gbe/evr048

[7] Provirophages and transpovirons as the diverse mobilome of giant viruses [J].

Desnues, Christelle ;

La Scola, Bernard ;

Yutin, Natalya ;

Fournous, Ghislain ;

Robert, Catherine ;

Azza, Said ;

Jardot, Priscilla ;

Monteil, Sonia ;

Campocasso, Angelique ;

Koonin, Eugene V. ;

Raoult, Didier .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (44) :18078-18083

[8] Poxviruses Deploy Genomic Accordions to Adapt Rapidly against Host Antiviral Defenses [J].

Elde, Nels C. ;

Child, Stephanie J. ;

Eickbush, Michael T. ;

Kitzman, Jacob O. ;

Rogers, Kelsey S. ;

Shendure, Jay ;

Geballe, Adam P. ;

Malik, Harmit S. .

CELL, 2012, 150 (04) :831-841

[9] Genome sequence diversity and clues to the evolution of variola (smallpox) virus [J].

Esposito, Joseph J. ;

Sammons, Scott A. ;

Frace, A. Michael ;

Osborne, John D. ;

Olsen-Rasmussen, Melissa ;

Zhang, Ming ;

Govil, Dhwani ;

Damon, Inger K. ;

Kline, Richard ;

Laker, Miriam ;

Li, Yu ;

Smith, Geoffrey L. ;

Meyer, Hermann ;

LeDuc, James W. ;

Wohlhueter, Robert M. .

SCIENCE, 2006, 313 (5788) :807-812

[10] I am what I eat and I eat what I am:: acquisition of bacterial genes by giant viruses [J].

Filee, Jonathan ;

Siguier, Patricia ;

Chandler, Mick .

TRENDS IN GENETICS, 2007, 23 (01) :10-15