The Evolution of HD2 Proteins in Green Plants

被引：43

作者：

Bourque, S. ^{[1
]}

Jeandroz, S. ^{[1
]}

Grandperret, V. ^{[1
]}

Lehotai, N. ^{[1
,21
]}

Aime, S. ^{[1
]}

Soltis, D. E. ^{[2
,3
]}

Miles, N. W. ^{[4
]}

Melkonian, M. ^{[5
]}

Deyholos, M. K. ^{[6
]}

Leebens-Mack, J. H. ^{[7
]}

Chase, M. W. ^{[8
,9
]}

Rothfels, C. J. ^{[10
,11
]}

Stevenson, D. W. ^{[12
]}

Graham, S. W. ^{[13
]}

Wang, X. ^{[14
]}

Wu, S. ^{[14
]}

Pires, J. C. ^{[15
,16
]}

Edger, P. P. ^{[17
]}

Yan, Z. ^{[18
]}

Xie, Y. ^{[18
]}

Carpenter, E. J. ^{[19
]}

Wong, G. K. S. ^{[18
,19
,20
]}

Wendehenne, D. ^{[1
]}

Nicolas-Frances, V. ^{[1
]}

机构：

[1] Univ Bourgogne Franche Comte, CNRS, INRA, AgroSup Dijon,Agroecol, F-21000 Dijon, France

[2] Florida Museum Nat Hist, Dept Biol, Gainesville, FL 32611 USA

[3] Univ Florida, Genet Inst, Gainesville, FL 32611 USA

[4] Univ North Texas, Dept Biol Sci, 1155 Union Circle, Denton, TX 76201 USA

[5] Univ Cologne, Cologne Bioctr, Inst Bot, D-50674 Cologne, Germany

[6] Univ British Columbia, Dept Biol, Kelowna, BC V1V 1V7, Canada

[7] Univ Georgia, Dept Plant Biol, Athens, GA 30602 USA

[8] Royal Bot Gardens Kew, Jodrell Lab, Richmond, Surrey, England

[9] Univ Western Australia, Plant Biol, 35 Stirling Highway, Perth, WA 6009, Australia

[10] Univ Calif Berkeley, Univ Herbarium, Berkeley, CA 94720 USA

[11] Univ Calif Berkeley, Dept Integrat Biol, Berkeley, CA 94720 USA

[12] New York Bot Garden, 2900 Southern Blvd, Bronx, NY 10458 USA

[13] Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada

[14] Chinese Acad Sci, Beijing Inst Gen, Key Lab Genome Sci & Informat, 1-104 Beichen West Rd, Beijing 100101, Peoples R China

[15] Univ Missouri, Div Biol Sci, Columbia, MO 65211 USA

[16] Univ Missouri, Bond Life Sci Ctr, Columbia, MO 65211 USA

[17] Michigan State Univ, Dept Hort, E Lansing, MI 48823 USA

[18] Beijing Genom Inst BGI Shenzhen, Ind Zone, Shenzhen 518083, Peoples R China

[19] Univ Alberta, Dept Biol Sci, Edmonton, AB T6G 2E9, Canada

[20] Univ Alberta, Dept Med, Edmonton, AB T6G 2E1, Canada

[21] Umea Univ, Umea Plant Sci Ctr, Dept Plant Physiol, S-90187 Umea, Sweden

来源：

TRENDS IN PLANT SCIENCE | 2016年 / 21卷 / 12期

关键词：

MULTIPLE SEQUENCE ALIGNMENT; HISTONE DEACETYLASES;

D O I：

10.1016/j.tplants.2016.10.001

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

In eukaryotes, protein deacetylation is carried out by two well-conserved his tone deacetylase (HDAC) families: RPD3/HDA1 and SIR2. Intriguingly, model plants such as Arabidopsis express an additional plant-specific HDAC family, termed type-2 HDACs (HD2s). Transcriptomic analyses from more than 1300 green plants generated by the 1000 plants (1KP) consortium showed that HD2s appeared early in green plant evolution, the first members being detected in several streptophyte green alga. The HD2 family has expanded via several rounds of successive duplication; members are expressed in all major green plant clades. Interestingly, angiosperm species express new HD2 genes devoid of a zinc-finger domain, one of the main structural features of HD2s. These variants may have been associated with the origin and/or the biology of the ovule/seed.

引用

页码：1008 / 1016

页数：9

共 26 条

[1]

Aravind L., 1998, SCIENCE, V280, P1167, DOI [10.1126/science.280.5367.1167a, DOI 10.1126/SCIENCE.280.5367.1167A]

[2] Type-2 histone deacetylases as new regulators of elicitor-induced cell death in plants [J].

Bourque, Stephane ;

Dutartre, Agnes ;

Hammoudi, Valentin ;

Blanc, Sabrina ;

Dahan, Jennifer ;

Jeandroz, Sylvain ;

Pichereaux, Carole ;

Rossignol, Michel ;

Wendehenne, David .

NEW PHYTOLOGIST, 2011, 192 (01) :127-139

[3] Purification and characterization of a high molecular weight histone deacetylase complex (HD2) of maize embryos [J].

Brosch, G ;

Lusser, A ;

GoralikSchramel, M ;

Loidl, P .

BIOCHEMISTRY, 1996, 35 (49) :15907-15914

[4] Molecular characterization of three rice SET-domain proteins [J].

Ding, Bo ;

Zhu, Yan ;

Gao, Juan ;

Yu, Yu ;

Cao, Kaiming ;

Shen, Wen-Hui ;

Dong, Aiwu .

PLANT SCIENCE, 2007, 172 (06) :1072-1078

[5] HDT701, a Histone H4 Deacetylase, Negatively Regulates Plant Innate Immunity by Modulating Histone H4 Acetylation of Defense-Related Genes in Rice [J].

Ding, Bo ;

Bellizzi, Maria del Rosario ;

Ning, Yuese ;

Meyers, Blake C. ;

Wang, Guo-Liang .

PLANT CELL, 2012, 24 (09) :3783-3794

[6] MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].

Edgar, RC .

NUCLEIC ACIDS RESEARCH, 2004, 32 (05) :1792-1797

[7] The Pentameric Nucleoplasmin Fold Is Present in Drosophila FKBP39 and a Large Number of Chromatin-Related Proteins [J].

Edlich-Muth, Christian ;

Artero, Jean-Baptiste ;

Callow, Phil ;

Przewloka, Marcin R. ;

Watson, Aleksandra A. ;

Zhang, Wei ;

Glover, David M. ;

Debski, Janusz ;

Dadlez, Michal ;

Round, Adam R. ;

Forsyth, V. Trevor ;

Laue, Ernest D. .

JOURNAL OF MOLECULAR BIOLOGY, 2015, 427 (10) :1949-1963

[8] Specificity of Linear Motifs That Bind to a Common Mitogen-Activated Protein Kinase Docking Groove [J].

Garai, Agnes ;

Zeke, Andras ;

Gogl, Gergo ;

Toero, Imre ;

Foerdos, Ferenc ;

Blankenburg, Hagen ;

Barkai, Tuende ;

Varga, Janos ;

Alexa, Anita ;

Emig, Dorothea ;

Albrecht, Mario ;

Remenyi, Attila .

SCIENCE SIGNALING, 2012, 5 (245)

[9] Type-II histone deacetylases: elusive plant nuclear signal transducers [J].

Grandperret, Vincent ;

Nicolas-Frances, Valerie ;

Wendehenne, David ;

Bourque, Stephane .

PLANT CELL AND ENVIRONMENT, 2014, 37 (06) :1259-1269

[10]

Hruz Tomas, 2008, Advances in Bioinformatics, V2008, P420747, DOI 10.1155/2008/420747

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