Complete integrability of information processing by biochemical reactions

被引:14
作者
Agliari, Elena [1 ,3 ]
Barra, Adriano [2 ,3 ]
Dello Schiavo, Lorenzo [4 ]
Moro, Antonio [5 ]
机构
[1] Sapienza Univ Roma, Dipartimento Matemat, Rome, Italy
[2] Sapienza Univ Roma, Dept Comp Sci, Rome, Italy
[3] Ist Nazl Alta Matemat GNFM INdAM, Rome, Italy
[4] Rhein Friedrich Wilhelms Univ Bonn, Inst Angew Math, Bonn, Germany
[5] Univ Northumbria Newcastle, Dept Math & Informat Sci, Newcastle Upon Tyne, Tyne & Wear, England
来源
SCIENTIFIC REPORTS | 2016年 / 6卷
关键词
GENETIC TOGGLE SWITCH; NEGATIVE COOPERATIVITY; STATISTICAL-MECHANICS; LIGAND-BINDING; MODELS; NETWORKS; NOISE; RECEPTORS;
D O I
10.1038/srep36314
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Statistical mechanics provides an effective framework to investigate information processing in biochemical reactions. Within such framework far-reaching analogies are established among (anti-) cooperative collective behaviors in chemical kinetics, (anti-) ferromagnetic spin models in statistical mechanics and operational amplifiers/flip-flops in cybernetics. The underlying modeling - based on spin systems - has been proved to be accurate for a wide class of systems matching classical (e.g. Michaelis-Menten, Hill, Adair) scenarios in the infinite-size approximation. However, the current research in biochemical information processing has been focusing on systems involving a relatively small number of units, where this approximation is no longer valid. Here we show that the whole statistical mechanical description of reaction kinetics can be re-formulated via a mechanical analogy - based on completely integrable hydrodynamic-type systems of PDEs - which provides explicit finite-size solutions, matching recently investigated phenomena (e.g. noise-induced cooperativity, stochastic bi-stability, quorum sensing). The resulting picture, successfully tested against a broad spectrum of data, constitutes a neat rationale for a numerically effective and theoretically consistent description of collective behaviors in biochemical reactions.
引用
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页数:23
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