Why proteomics is not the new genomics and the future of mass spectrometry in cell biology

被引:22
作者
Sidoli, Simone [1 ]
Kulej, Katarzyna [1 ,2 ]
Garcia, Benjamin A. [1 ]
机构
[1] Univ Penn, Perelman Sch Med, Dept Biochem & Biophys, Epigenet Program, Philadelphia, PA 19104 USA
[2] Childrens Hosp Philadelphia, Div Canc Pathobiol, Philadelphia, PA 19104 USA
基金
美国国家卫生研究院;
关键词
STEM-CELLS; IN-VIVO; DRAFT;
D O I
10.1083/jcb.201612010
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Mass spectrometry (MS) is an essential part of the cell biologist's proteomics toolkit, allowing analyses at molecular and system-wide scales. However, proteomics still lag behind genomics in popularity and ease of use. We discuss key differences between MS-based-omics and other booming-omics technologies and highlight what we view as the future of MS and its role in our increasingly deep understanding of cell biology.
引用
收藏
页码:21 / 24
页数:4
相关论文
共 14 条
[1]   Intraoperative Tissue Identification Using Rapid Evaporative Ionization Mass Spectrometry [J].
Balog, Julia ;
Sasi-Szabo, Laszlo ;
Kinross, James ;
Lewis, Matthew R. ;
Muirhead, Laura J. ;
Veselkov, Kirill ;
Mirnezami, Reza ;
Dezso, Balazs ;
Damjanovich, Laszlo ;
Darzi, Ara ;
Nicholson, Jeremy K. ;
Takats, Zoltan .
SCIENCE TRANSLATIONAL MEDICINE, 2013, 5 (194)
[2]   Ambient mass spectrometry [J].
Cooks, RG ;
Ouyang, Z ;
Takats, Z ;
Wiseman, JM .
SCIENCE, 2006, 311 (5767) :1566-1570
[3]   The in vivo phosphorylation sites in multiple isoforms of amphiphysin I from rat brain nerve terminals [J].
Craft, George E. ;
Graham, Mark E. ;
Bache, Nicolai ;
Larsen, Martin R. ;
Robinson, Phillip J. .
MOLECULAR & CELLULAR PROTEOMICS, 2008, 7 (06) :1146-1161
[4]   Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis [J].
Gillet, Ludovic C. ;
Navarro, Pedro ;
Tate, Stephen ;
Roest, Hannes ;
Selevsek, Nathalie ;
Reiter, Lukas ;
Bonner, Ron ;
Aebersold, Ruedi .
MOLECULAR & CELLULAR PROTEOMICS, 2012, 11 (06)
[5]  
Gomez-Cabrero D., 2014, BMC SYST BIOL S2, V8, P11, DOI DOI 10.1186/1752-0509-8-S2-I1)
[6]   High-Resolution Mapping of RNA-Binding Regions in the Nuclear Proteome of Embryonic Stem Cells [J].
He, Chongsheng ;
Sidoli, Simone ;
Warneford-Thomson, Robert ;
Tatomer, Deirdre C. ;
Wilusz, Jeremy E. ;
Garcia, Benjamin A. ;
Bonasio, Roberto .
MOLECULAR CELL, 2016, 64 (02) :416-430
[7]   The One Hour Yeast Proteome [J].
Hebert, Alexander S. ;
Richards, Alicia L. ;
Bailey, Derek J. ;
Ulbrich, Arne ;
Coughlin, Emma E. ;
Westphall, Michael S. ;
Coon, Joshua J. .
MOLECULAR & CELLULAR PROTEOMICS, 2014, 13 (01) :339-347
[8]   Ion mobility-mass spectrometry [J].
Kanu, Abu B. ;
Dwivedi, Prabha ;
Tam, Maggie ;
Matz, Laura ;
Hill, Herbert H., Jr. .
JOURNAL OF MASS SPECTROMETRY, 2008, 43 (01) :1-22
[9]   A draft map of the human proteome [J].
Kim, Min-Sik ;
Pinto, Sneha M. ;
Getnet, Derese ;
Nirujogi, Raja Sekhar ;
Manda, Srikanth S. ;
Chaerkady, Raghothama ;
Madugundu, Anil K. ;
Kelkar, Dhanashree S. ;
Isserlin, Ruth ;
Jain, Shobhit ;
Thomas, Joji K. ;
Muthusamy, Babylakshmi ;
Leal-Rojas, Pamela ;
Kumar, Praveen ;
Sahasrabuddhe, Nandini A. ;
Balakrishnan, Lavanya ;
Advani, Jayshree ;
George, Bijesh ;
Renuse, Santosh ;
Selvan, Lakshmi Dhevi N. ;
Patil, Arun H. ;
Nanjappa, Vishalakshi ;
Radhakrishnan, Aneesha ;
Prasad, Samarjeet ;
Subbannayya, Tejaswini ;
Raju, Rajesh ;
Kumar, Manish ;
Sreenivasamurthy, Sreelakshmi K. ;
Marimuthu, Arivusudar ;
Sathe, Gajanan J. ;
Chavan, Sandip ;
Datta, Keshava K. ;
Subbannayya, Yashwanth ;
Sahu, Apeksha ;
Yelamanchi, Soujanya D. ;
Jayaram, Savita ;
Rajagopalan, Pavithra ;
Sharma, Jyoti ;
Murthy, Krishna R. ;
Syed, Nazia ;
Goel, Renu ;
Khan, Aafaque A. ;
Ahmad, Sartaj ;
Dey, Gourav ;
Mudgal, Keshav ;
Chatterjee, Aditi ;
Huang, Tai-Chung ;
Zhong, Jun ;
Wu, Xinyan ;
Shaw, Patrick G. .
NATURE, 2014, 509 (7502) :575-+
[10]   Measurement of internal body time by blood metabolomics [J].
Minami, Yoichi ;
Kasukawa, Takeya ;
Kakazu, Yuji ;
Iigo, Masayuki ;
Sugimoto, Masahiro ;
Ikeda, Satsuki ;
Yasui, Akira ;
van der Horst, Gijsbertus T. J. ;
Soga, Tomoyoshi ;
Ueda, Hiroki R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (24) :9890-9895