Utilization of Genotyping-by-Sequencing (GBS) for Rice Pre-Breeding and Improvement: A Review

被引：16

作者：

Reyes, Vincent Pamugas ^{[1
]}

Kitony, Justine Kipruto ^{[1
]}

Nishiuchi, Shunsaku ^{[1
]}

Makihara, Daigo ^{[2
]}

Doi, Kazuyuki ^{[1
]}

机构：

[1] Nagoya Univ, Grad Sch Bioagr Sci, Nagoya, Aichi 4648601, Japan

[2] Nagoya Univ, Int Ctr Res & Educ Agr, Nagoya, Aichi 4648601, Japan

来源：

LIFE-BASEL | 2022年 / 12卷 / 11期

关键词：

molecular breeding; DNA markers; genomic selection; NGS; GENOMIC SELECTION; GENOMEWIDE SELECTION; COMPLEX TRAITS; MAJOR QTL; TOOL SET; PREDICTION; WHEAT; ASSOCIATION; GERMPLASM; MARKERS;

D O I：

10.3390/life12111752

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Molecular markers play a crucial role in the improvement of rice. To benefit from these markers, genotyping is carried out to identify the differences at a specific position in the genome of individuals. The advances in sequencing technologies have led to the development of different genotyping techniques such as genotyping-by-sequencing. Unlike PCR-fragment-based genotyping, genotyping-by-sequencing has enabled the parallel sequencing and genotyping of hundreds of samples in a single run, making it more cost-effective. Currently, GBS is being used in several pre-breeding programs of rice to identify beneficial genes and QTL from different rice genetic resources. In this review, we present the current advances in the utilization of genotyping-by-sequencing for the development of rice pre-breeding materials and the improvement of existing rice cultivars. The challenges and perspectives of using this approach are also highlighted.

引用

页数：13

共 80 条

[1] Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga [J].

Arbelaez, Juan D. ;

Moreno, Laura T. ;

Singh, Namrata ;

Tung, Chih-Wei ;

Maron, Lyza G. ;

Ospina, Yolima ;

Martinez, Cesar P. ;

Grenier, Cecile ;

Lorieux, Mathias ;

McCouch, Susan .

MOLECULAR BREEDING, 2015, 35 (02)

[2] Identification, isolation and pyramiding of quantitative trait loci for rice breeding [J].

Ashikari, Motoyuki ;

Matsuoka, Makoto .

TRENDS IN PLANT SCIENCE, 2006, 11 (07) :344-350

[3] Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers [J].

Baird, Nathan A. ;

Etter, Paul D. ;

Atwood, Tressa S. ;

Currey, Mark C. ;

Shiver, Anthony L. ;

Lewis, Zachary A. ;

Selker, Eric U. ;

Cresko, William A. ;

Johnson, Eric A. .

PLOS ONE, 2008, 3 (10)

[4] Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding [J].

Bandillo, Nonoy ;

Raghavan, Chitra ;

Muyco, Pauline Andrea ;

Sevilla, Ma Anna Lynn ;

Lobina, Irish T. ;

Dilla-Ermita, Christine Jade ;

Tung, Chih-Wei ;

McCouch, Susan ;

Thomson, Michael ;

Mauleon, Ramil ;

Singh, Rakesh Kumar ;

Gregorio, Glenn ;

Redona, Edilberto ;

Leung, Hei .

RICE, 2013, 6

[5] Breeding schemes for the implementation of genomic selection in wheat (Triticum spp.) [J].

Bassi, Filippo M. ;

Bentley, Alison R. ;

Charmet, Gilles ;

Ortiz, Rodomiro ;

Crossa, Jose .

PLANT SCIENCE, 2016, 242 :23-36

[6] Whole-genome re-sequencing [J].

Bentley, David R. .

CURRENT OPINION IN GENETICS & DEVELOPMENT, 2006, 16 (06) :545-552

[7] Genomewide Selection for Rapid Introgression of Exotic Germplasm in Maize [J].

Bernardo, Rex .

CROP SCIENCE, 2009, 49 (02) :419-425

[8] Selection of trait-specific markers and multi environment models improve genomic predictive ability in rice [J].

Bhandari, Aditi ;

Bartholome, Jerome ;

Cao-Hamadoun, Tuong-Vi ;

Kumari, Nilima ;

Frouin, Julien ;

Kumar, Arvind ;

Ahmadi, Nourollah .

PLOS ONE, 2019, 14 (05)

[9] TASSEL: software for association mapping of complex traits in diverse samples [J].

Bradbury, Peter J. ;

Zhang, Zhiwu ;

Kroon, Dallas E. ;

Casstevens, Terry M. ;

Ramdoss, Yogesh ;

Buckler, Edward S. .

BIOINFORMATICS, 2007, 23 (19) :2633-2635

[10]

Brar D.S., 2008, RICE GENETICS 3 IN 2, P477

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