Genomics reveals new landscapes for crop improvement

被引：66

作者：

Bevan, Michael W. ^{[1
]}

Uauy, Cristobal ^{[1
]}

机构：

[1] John Innes Ctr, Norwich NR4 7UH, Norfolk, England

来源：

GENOME BIOLOGY | 2013年 / 14卷 / 06期

基金：

英国生物技术与生命科学研究理事会;

关键词：

Genomics; crop improvement; genomic selection; systems breeding; DRAFT GENOME; GENE LOSS; WHEAT; SEQUENCE; EVOLUTION; PATTERNS; PROVIDES; MARKERS; MAP; ORGANIZATION;

D O I：

10.1186/gb-2013-14-6-206

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

The sequencing of large and complex genomes of crop species, facilitated by new sequencing technologies and bioinformatic approaches, has provided new opportunities for crop improvement. Current challenges include understanding how genetic variation translates into phenotypic performance in the field.

引用

页数：11

共 74 条

[1] De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera) [J].

Al-Dous, Eman K. ;

George, Binu ;

Al-Mahmoud, Maryam E. ;

Al-Jaber, Moneera Y. ;

Wang, Hao ;

Salameh, Yasmeen M. ;

Al-Azwani, Eman K. ;

Chaluvadi, Srinivasa ;

Pontaroli, Ana C. ;

DeBarry, Jeremy ;

Arondel, Vincent ;

Ohlrogge, John ;

Saie, Imad J. ;

Suliman-Elmeer, Khaled M. ;

Bennetzen, Jeffrey L. ;

Kruegger, Robert R. ;

Malek, Joel A. .

NATURE BIOTECHNOLOGY, 2011, 29 (06) :521-U84

[2] Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.) [J].

Allen, Alexandra M. ;

Barker, Gary L. A. ;

Berry, Simon T. ;

Coghill, Jane A. ;

Gwilliam, Rhian ;

Kirby, Susan ;

Robinson, Phil ;

Brenchley, Rachel C. ;

D'Amore, Rosalinda ;

McKenzie, Neil ;

Waite, Darren ;

Hall, Anthony ;

Bevan, Michael ;

Hall, Neil ;

Edwards, Keith J. .

PLANT BIOTECHNOLOGY JOURNAL, 2011, 9 (09) :1086-1099

[3] The genome of Theobroma cacao [J].

Argout, Xavier ;

Salse, Jerome ;

Aury, Jean-Marc ;

Guiltinan, Mark J. ;

Droc, Gaetan ;

Gouzy, Jerome ;

Allegre, Mathilde ;

Chaparro, Cristian ;

Legavre, Thierry ;

Maximova, Siela N. ;

Abrouk, Michael ;

Murat, Florent ;

Fouet, Olivier ;

Poulain, Julie ;

Ruiz, Manuel ;

Roguet, Yolande ;

Rodier-Goud, Maguy ;

Barbosa-Neto, Jose Fernandes ;

Sabot, Francois ;

Kudrna, Dave ;

Ammiraju, Jetty Siva S. ;

Schuster, Stephan C. ;

Carlson, John E. ;

Sallet, Erika ;

Schiex, Thomas ;

Dievart, Anne ;

Kramer, Melissa ;

Gelley, Laura ;

Shi, Zi ;

Berard, Aurelie ;

Viot, Christopher ;

Boccara, Michel ;

Risterucci, Ange Marie ;

Guignon, Valentin ;

Sabau, Xavier ;

Axtell, Michael J. ;

Ma, Zhaorong ;

Zhang, Yufan ;

Brown, Spencer ;

Bourge, Mickael ;

Golser, Wolfgang ;

Song, Xiang ;

Clement, Didier ;

Rivallan, Ronan ;

Tahi, Mathias ;

Akaza, Joseph Moroh ;

Pitollat, Bertrand ;

Gramacho, Karina ;

D'Hont, Angelique ;

Brunel, Dominique .

NATURE GENETICS, 2011, 43 (02) :101-108

[4] Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing [J].

Bancroft, Ian ;

Morgan, Colin ;

Fraser, Fiona ;

Higgins, Janet ;

Wells, Rachel ;

Clissold, Leah ;

Baker, David ;

Long, Yan ;

Meng, Jinling ;

Wang, Xiaowu ;

Liu, Shengyi ;

Trick, Martin .

NATURE BIOTECHNOLOGY, 2011, 29 (08) :762-U128

[5]

Batzoglou S, 2002, GENOME RES, V12, P177, DOI 10.1101/gr.208902

[6] Reference genome sequence of the model plant Setaria [J].

Bennetzen, Jeffrey L. ;

Schmutz, Jeremy ;

Wang, Hao ;

Percifield, Ryan ;

Hawkins, Jennifer ;

Pontaroli, Ana C. ;

Estep, Matt ;

Feng, Liang ;

Vaughn, Justin N. ;

Grimwood, Jane ;

Jenkins, Jerry ;

Barry, Kerrie ;

Lindquist, Erika ;

Hellsten, Uffe ;

Deshpande, Shweta ;

Wang, Xuewen ;

Wu, Xiaomei ;

Mitros, Therese ;

Triplett, Jimmy ;

Yang, Xiaohan ;

Ye, Chu-Yu ;

Mauro-Herrera, Margarita ;

Wang, Lin ;

Li, Pinghua ;

Sharma, Manoj ;

Sharma, Rita ;

Ronald, Pamela C. ;

Panaud, Olivier ;

Kellogg, Elizabeth A. ;

Brutnell, Thomas P. ;

Doust, Andrew N. ;

Tuskan, Gerald A. ;

Rokhsar, Daniel ;

Devos, Katrien M. .

NATURE BIOTECHNOLOGY, 2012, 30 (06) :555-+

[7] Accurate whole human genome sequencing using reversible terminator chemistry [J].

Bentley, David R. ;

Balasubramanian, Shankar ;

Swerdlow, Harold P. ;

Smith, Geoffrey P. ;

Milton, John ;

Brown, Clive G. ;

Hall, Kevin P. ;

Evers, Dirk J. ;

Barnes, Colin L. ;

Bignell, Helen R. ;

Boutell, Jonathan M. ;

Bryant, Jason ;

Carter, Richard J. ;

Cheetham, R. Keira ;

Cox, Anthony J. ;

Ellis, Darren J. ;

Flatbush, Michael R. ;

Gormley, Niall A. ;

Humphray, Sean J. ;

Irving, Leslie J. ;

Karbelashvili, Mirian S. ;

Kirk, Scott M. ;

Li, Heng ;

Liu, Xiaohai ;

Maisinger, Klaus S. ;

Murray, Lisa J. ;

Obradovic, Bojan ;

Ost, Tobias ;

Parkinson, Michael L. ;

Pratt, Mark R. ;

Rasolonjatovo, Isabelle M. J. ;

Reed, Mark T. ;

Rigatti, Roberto ;

Rodighiero, Chiara ;

Ross, Mark T. ;

Sabot, Andrea ;

Sankar, Subramanian V. ;

Scally, Aylwyn ;

Schroth, Gary P. ;

Smith, Mark E. ;

Smith, Vincent P. ;

Spiridou, Anastassia ;

Torrance, Peta E. ;

Tzonev, Svilen S. ;

Vermaas, Eric H. ;

Walter, Klaudia ;

Wu, Xiaolin ;

Zhang, Lu ;

Alam, Mohammed D. ;

Anastasi, Carole .

NATURE, 2008, 456 (7218) :53-59

[8] Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS [J].

Berkman, Paul J. ;

Skarshewski, Adam ;

Lorenc, Michal T. ;

Lai, Kaitao ;

Duran, Chris ;

Ling, Edmund Y. S. ;

Stiller, Jiri ;

Smits, Lars ;

Imelfort, Michael ;

Manoli, Sahana ;

McKenzie, Megan ;

Kubalakova, Marie ;

Simkova, Hana ;

Batley, Jacqueline ;

Fleury, Delphine ;

Dolezel, Jaroslav ;

Edwards, David .

PLANT BIOTECHNOLOGY JOURNAL, 2011, 9 (07) :768-775

[9] Analysis of the breadwheat genome using whole-genome shotgun sequencing [J].

Brenchley, Rachel ;

Spannagl, Manuel ;

Pfeifer, Matthias ;

Barker, Gary L. A. ;

D'Amore, Rosalinda ;

Allen, Alexandra M. ;

McKenzie, Neil ;

Kramer, Melissa ;

Kerhornou, Arnaud ;

Bolser, Dan ;

Kay, Suzanne ;

Waite, Darren ;

Trick, Martin ;

Bancroft, Ian ;

Gu, Yong ;

Huo, Naxin ;

Luo, Ming-Cheng ;

Sehgal, Sunish ;

Gill, Bikram ;

Kianian, Sharyar ;

Anderson, Olin ;

Kersey, Paul ;

Dvorak, Jan ;

McCombie, W. Richard ;

Hall, Anthony ;

Mayer, Klaus F. X. ;

Edwards, Keith J. ;

Bevan, Michael W. ;

Hall, Neil .

NATURE, 2012, 491 (7426) :705-710

[10] Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.) [J].

Chao, Shiaoman ;

Dubcovsky, Jorge ;

Dvorak, Jan ;

Luo, Ming-Cheng ;

Baenziger, Stephen P. ;

Matnyazov, Rustam ;

Clark, Dale R. ;

Talbert, Luther E. ;

Anderson, James A. ;

Dreisigacker, Susanne ;

Glover, Karl ;

Chen, Jianli ;

Campbell, Kim ;

Bruckner, Phil L. ;

Rudd, Jackie C. ;

Haley, Scott ;

Carver, Brett F. ;

Perry, Sid ;

Sorrells, Mark E. ;

Akhunov, Eduard D. .

BMC GENOMICS, 2010, 11

← 1 2 3 4 5 6 7 8 →