tRNA-derived small RNAs: New players in genome protection against retrotransposons

被引:39
作者
Martinez, German [1 ,2 ]
机构
[1] Swedish Univ Agr Sci, Dept Plant Biol, S-75007 Uppsala, Sweden
[2] Linnean Ctr Plant Biol, S-75007 Uppsala, Sweden
基金
瑞典研究理事会;
关键词
RNAi; RNA silencing; tRNAs; tRFs; tRNA halves; epigenetics; transposable elements; retrotransposons; LTR retrotransposons; TRANSPOSABLE ELEMENTS; MESSENGER-RNAS; FRAGMENTS; STRESS; TRANSLATION; PLANT; METHYLATION; INHIBIT; PIRNAS; IDENTIFICATION;
D O I
10.1080/15476286.2017.1403000
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Previously believed to be mere random degradation products, tRNA-derived small RNAs have been lately connected to a series of functions that include, surprisingly, genome protection against retrotransposons. tRNAs have been known for a long time to be involved in the replication cycle of retroviruses, pararetroviruses and retrotransposons as primers of their reverse transcription. tRNA-derived small RNAs, as functional small RNAs or as mere tRNA degradation products, have emerged as important players in the regulation of genic transcription. Nevertheless, the involvement of functional sRNAs derived from tRNA transcripts in transposon posttranscriptional control is a regulatory layer that remained elusive until now. Here I review the recent discoveries in the field that connect tRNA-derived small RNAs and retrotransposon control.
引用
收藏
页码:170 / 175
页数:6
相关论文
共 51 条
[1]   Genome-wide identification and characterization of tRNA-derived RNA fragments in land plants [J].
Alves, Cristiane S. ;
Vicentini, Renato ;
Duarte, Gustavo T. ;
Pinoti, Vitor F. ;
Vincentz, Michel ;
Nogueira, Fabio T. S. .
PLANT MOLECULAR BIOLOGY, 2017, 93 (1-2) :35-48
[2]   piRNAs Can Trigger a Multigenerational Epigenetic Memory in the Germline of C. elegans [J].
Ashe, Alyson ;
Sapetschnig, Alexandra ;
Weick, Eva-Maria ;
Mitchell, Jacinth ;
Bagijn, Marloes P. ;
Cording, Amy C. ;
Doebley, Anna-Lisa ;
Goldstein, Leonard D. ;
Lehrbach, Nicolas J. ;
Le Pen, Jeremie ;
Pintacuda, Greta ;
Sakaguchi, Aisa ;
Sarkies, Peter ;
Ahmed, Shawn ;
Miska, Eric A. .
CELL, 2012, 150 (01) :88-99
[3]   Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders [J].
Blanco, Sandra ;
Dietmann, Sabine ;
Flores, Joana V. ;
Hussain, Shobbir ;
Kutter, Claudia ;
Humphreys, Peter ;
Lukk, Margus ;
Lombard, Patrick ;
Treps, Lucas ;
Popis, Martyna ;
Kellner, Stefanie ;
Hoelter, Sabine M. ;
Garrett, Lillian ;
Wurst, Wolfgang ;
Becker, Lore ;
Klopstock, Thomas ;
Fuchs, Helmut ;
Gailus-Durner, Valerie ;
de Angelis, Martin Hrabe ;
Karadottir, Ragnhildur T. ;
Helm, Mark ;
Ule, Jernej ;
Gleeson, Joseph G. ;
Odom, Duncan T. ;
Frye, Michaela .
EMBO JOURNAL, 2014, 33 (18) :2020-2039
[4]   An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing [J].
Brennecke, Julius ;
Malone, Colin D. ;
Aravin, Alexei A. ;
Sachidanandam, Ravi ;
Stark, Alexander ;
Hannon, Gregory J. .
SCIENCE, 2008, 322 (5906) :1387-1392
[5]   How a Retrotransposon Exploits the Plant's Heat Stress Response for Its Activation [J].
Cavrak, Vladimir V. ;
Lettner, Nicole ;
Jamge, Suraj ;
Kosarewicz, Agata ;
Bayer, Laura Maria ;
Scheid, Ortrun Mittelsten .
PLOS GENETICS, 2014, 10 (01)
[6]   Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder [J].
Chen, Qi ;
Yan, Menghong ;
Cao, Zhonghong ;
Li, Xin ;
Zhang, Yunfang ;
Shi, Junchao ;
Feng, Gui-hai ;
Peng, Hongying ;
Zhang, Xudong ;
Zhang, Ying ;
Qian, Jingjing ;
Duan, Enkui ;
Zhai, Qiwei ;
Zhou, Qi .
SCIENCE, 2016, 351 (6271) :397-400
[7]   Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs [J].
Cole, Christian ;
Sobala, Andrew ;
Lu, Cheng ;
Thatcher, Shawn R. ;
Bowman, Andrew ;
Brown, John W. S. ;
Green, Pamela J. ;
Barton, Geoffrey J. ;
Hutvagner, Gyorgy .
RNA, 2009, 15 (12) :2147-2160
[8]   miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis [J].
Creasey, Kate M. ;
Zhai, Jixian ;
Borges, Filipe ;
Van Ex, Frederic ;
Regulski, Michael ;
Meyers, Blake C. ;
Martienssen, Robert A. .
NATURE, 2014, 508 (7496) :411-+
[9]   5′ tRNA halves: the next generation of immune signaling molecules [J].
Dhahbi, Joseph Mohsen .
FRONTIERS IN IMMUNOLOGY, 2015, 6
[10]   The origin of the tRNA molecule: Independent data favor a specific model of its evolution [J].
Di Giulio, Massimo .
BIOCHIMIE, 2012, 94 (07) :1464-1466