Accurate HEp-2 cell classification based on Sparse Coding of Superpixels

被引:23
作者
Ensafi, Shahab [1 ,2 ]
Lu, Shijian [2 ]
Kassim, Ashraf A. [1 ]
Tan, Chew Lim [3 ]
机构
[1] Natl Univ Singapore, Elect & Comp Engn, Fac Engn, 4 Engn Dr 3,Block E4,5-45, Singapore 117583, Singapore
[2] ASTAR, Inst Infocomm Res, 1 Fusionopolis Way,21-01 Connexis,South Tower, Singapore 138632, Singapore
[3] Natl Univ Singapore, Sch Comp, Dept Comp Sci, Comp 1, 13 Comp Dr, Singapore 117417, Singapore
关键词
Autoimmune diseases; HEp-2; cells; Computer-aided diagnosis; Cell classification; Superpixel; Sparse coding; RECOGNITION; FEATURES; IMAGES;
D O I
10.1016/j.patrec.2016.02.007
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Autoimmune Diseases (AD) are among the top 10 leading causes of death in female children and women in all age groups up to 64 years. They are widely diagnosed by various antibody tests that typically apply the Indirect Immunofluorescence (IIF) to the Human Epithelial Type-2 (HEp-2) cells. Automated classification of Hep-2 cells has attracted much research interest in recent years, and many of these approaches employ patch-based models and the Bag of Words (BoW) scheme, but often face several typical constraints such as the need to process a huge number of overlapped image patches, tuning of various parameters and etc. We propose a superpixel based Hep-2 cell classification technique by calculating the sparse codes of image patches which are prepared in a more intelligent way. In particular, the super-pixel approach guides the determination of the right image patches while aggregating the neighboring pixels of similar patterns. In addition, we introduce "extended superpixels" which is able to capture the most discriminative gradient information across the boundary of the HEp-2 cell images. The proposed technique has been evaluated over two public datasets (ICPR2012 and ICIP2013) and experiments show superior performance in both classification accuracy and speed of model training and cell classification. (C) 2016 Elsevier B.V. All rights reserved.
引用
收藏
页码:64 / 71
页数:8
相关论文
共 31 条
[1]   SLIC Superpixels Compared to State-of-the-Art Superpixel Methods [J].
Achanta, Radhakrishna ;
Shaji, Appu ;
Smith, Kevin ;
Lucchi, Aurelien ;
Fua, Pascal ;
Suesstrunk, Sabine .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2012, 34 (11) :2274-2281
[2]   Subclass Discriminant Analysis of morphological and textural features for HEp-2 staining pattern classification [J].
Di Cataldo, Santa ;
Bottino, Andrea ;
Ul Islam, Ihtesham ;
Vieira, Tiago Figueiredo ;
Ficarra, Elisa .
PATTERN RECOGNITION, 2014, 47 (07) :2389-2399
[3]  
Ensafi Shahab, 2014, 2014 1st Workshop on Pattern Recognition Techniques for Indirect Immunofluorescence Images, P29, DOI 10.1109/I3A.2014.12
[4]  
Ensafi S, 2015, I S BIOMED IMAGING, P679, DOI 10.1109/ISBI.2015.7163964
[5]   Automatic CAD System for HEp-2 Cell Image Classification [J].
Ensafi, Shahab ;
Lu, Shijian ;
Kassim, Ashraf A. ;
Tan, Chew Lim .
2014 22ND INTERNATIONAL CONFERENCE ON PATTERN RECOGNITION (ICPR), 2014, :3321-3326
[6]   Efficient graph-based image segmentation [J].
Felzenszwalb, PF ;
Huttenlocher, DP .
INTERNATIONAL JOURNAL OF COMPUTER VISION, 2004, 59 (02) :167-181
[7]   Pattern recognition in stained HEp-2 cells: Where are we now? [J].
Foggia, Pasquale ;
Percannella, Gennaro ;
Saggese, Alessia ;
Vento, Mario .
PATTERN RECOGNITION, 2014, 47 (07) :2305-2314
[8]   Benchmarking HEp-2 Cells Classification Methods [J].
Foggia, Pasquale ;
Percannella, Gennaro ;
Soda, Paolo ;
Vento, Mario .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2013, 32 (10) :1878-1889
[9]   Present and future of the autoimmunity laboratory [J].
González-Buitrago, JM ;
González, C .
CLINICA CHIMICA ACTA, 2006, 365 (1-2) :50-57
[10]  
Gragnaniello Diego, 2014, 2014 1st Workshop on Pattern Recognition Techniques for Indirect Immunofluorescence Images, P1, DOI 10.1109/I3A.2014.19