Benefits and limitations of whole genome versus targeted approaches for noninvasive prenatal testing for fetal aneuploidies

被引:48
作者
Boon, Elles M. J. [1 ]
Faas, Brigitte H. W. [2 ]
机构
[1] Leiden Univ, Med Ctr, Lab Diagnost Genome Anal, Dept Clin Genet, Leiden, Netherlands
[2] Radboud Univ Nijmegen, Med Ctr, Dept Human Genet, NL-6525 ED Nijmegen, Netherlands
关键词
CELL-FREE DNA; MATERNAL PLASMA; SIZE DISTRIBUTIONS; DIGITAL PCR; DIAGNOSIS; ABNORMALITIES; TRISOMY-21; LIGATION;
D O I
10.1002/pd.4111
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The goal to noninvasively detect fetal aneuploidies using circulating cell-free fetal DNA in the maternal plasma seems to be achieved by the use of massively parallel sequencing (MPS). To date, different MPS approaches exist, all aiming to deliver reliable results in a cost effective manner. The most widely used approach is the whole genome MPS method, in which sequencing is performed on maternal plasma to determine the presence of a fetal trisomy. To reduce costs targeted approaches, only analyzing loci from the chromosome(s) of interest has been developed. This review summarizes the different MPS approaches, their benefits and limitations and discusses the implications for future noninvasive prenatal testing. (c) 2013 John Wiley & Sons, Ltd.
引用
收藏
页码:563 / 568
页数:6
相关论文
共 41 条
[1]   Chromosome-selective sequencing of maternal plasma cell-free DNA for first-trimester detection of trisomy 21 and trisomy 18 [J].
Ashoor, Ghalia ;
Syngelaki, Argyro ;
Wagner, Marion ;
Birdir, Cahit ;
Nicolaides, Kypros H. .
AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY, 2012, 206 (04) :322.e1-322.e5
[2]   Genome-Wide Fetal Aneuploidy Detection by Maternal Plasma DNA Sequencing [J].
Bianchi, Diana W. ;
Platt, Lawrence D. ;
Goldberg, James D. ;
Abuhamad, Alfred Z. ;
Sehnert, Amy J. ;
Rava, Richard P. .
OBSTETRICS AND GYNECOLOGY, 2012, 119 (05) :890-901
[3]   Size distributions of maternal and fetal DNA in maternal plasma [J].
Chan, KCA ;
Zhang, J ;
Hui, ABY ;
Wong, N ;
Lau, TK ;
Leung, TN ;
Lo, KW ;
Huang, DWS ;
Lo, YMD .
CLINICAL CHEMISTRY, 2004, 50 (01) :88-92
[4]   Noninvasive prenatal testing for aneuploidy-ready for prime time? [J].
Chitty, Lyn S. ;
Hill, Melissa ;
White, Helen ;
Wright, David ;
Morris, Stephen .
AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY, 2012, 206 (04) :269-275
[5]   Non-invasive prenatal assessment of trisomy 21 by multiplexed maternal plasma DNA sequencing: large scale validity study [J].
Chiu, Rossa W. K. ;
Akolekar, Ranjit ;
Zheng, Yama W. L. ;
Leung, Tak Y. ;
Sun, Hao ;
Chan, K. C. Allen ;
Lun, Fiona M. F. ;
Go, Attie T. J. I. ;
Lau, Elizabeth T. ;
To, William W. K. ;
Leung, Wing C. ;
Tang, Rebecca Y. K. ;
Au-Yeung, Sidney K. C. ;
Lam, Helena ;
Kung, Yu Y. ;
Zhang, Xiuqing ;
van Vugt, John M. G. ;
Minekawa, Ryoko ;
Tang, Mary H. Y. ;
Wang, Jun ;
Oudejans, Cees B. M. ;
Lau, Tze K. ;
Nicolaides, Kypros H. ;
Lo, Y. M. Dennis .
BMJ-BRITISH MEDICAL JOURNAL, 2011, 342 :217
[6]   Maternal Plasma DNA Analysis with Massively Parallel Sequencing by Ligation for Noninvasive Prenatal Diagnosis of Trisomy 21 [J].
Chiu, Rossa W. K. ;
Sun, Hao ;
Akolekar, Ranjit ;
Clouser, Christopher ;
Lee, Clarence ;
McKernan, Kevin ;
Zhou, Daixing ;
Nicolaides, Kypros H. ;
Lo, Y. M. Dennis .
CLINICAL CHEMISTRY, 2010, 56 (03) :459-463
[7]   Noninvasive prenatal diagnosis of fetal chromosomal aneuploidy by massively parallel genomic sequencing of DNA in maternal plasma [J].
Chiu, Rossa W. K. ;
Chan, K. C. Allen ;
Gao, Yuan ;
Lau, Virginia Y. M. ;
Zheng, Wenli ;
Leung, Tak Y. ;
Foo, Chris H. F. ;
Xie, Bin ;
Tsui, Nancy B. Y. ;
Lun, Fiona M. F. ;
Zee, Benny C. Y. ;
Lau, Tze K. ;
Cantor, Charles R. ;
Lo, Y. M. Dennis .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (51) :20458-20463
[8]   Noninvasive detection of fetal trisomy 21 by sequencing of DNA in maternal blood: a study in a clinical setting [J].
Ehrich, Mathias ;
Deciu, Cosmin ;
Zwiefelhofer, Tricia ;
Tynan, John A. ;
Cagasan, Lesley ;
Tim, Roger ;
Lu, Vivian ;
McCullough, Ron ;
McCarthy, Erin ;
Nygren, Anders O. H. ;
Dean, Jarrod ;
Tang, Lin ;
Hutchison, Don ;
Lu, Tim ;
Wang, Huiquan ;
Angkachatchai, Vach ;
Oeth, Paul ;
Cantor, Charles R. ;
Bombard, Allan ;
van den Boom, Dirk .
AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY, 2011, 204 (03)
[9]   Non-invasive prenatal diagnosis of fetal aneuploidies using massively parallel sequencing-by-ligation and evidence that cell-free fetal DNA in the maternal plasma originates from cytotrophoblastic cells [J].
Faas, Brigitte H. W. ;
de Ligt, Joep ;
Janssen, Irene ;
Eggink, Alex J. ;
Wijnberger, Lia D. E. ;
van Vugt, John M. G. ;
Vissers, Lisenka ;
van Kessel, Ad Geurts .
EXPERT OPINION ON BIOLOGICAL THERAPY, 2012, 12 :S19-S26
[10]   Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood [J].
Fan, H. Christina ;
Blumenfeld, Yair J. ;
Chitkara, Usha ;
Hudgins, Louanne ;
Quake, Stephen R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (42) :16266-16271